BAC Information

Click to search

BAC

Clone NameMSMg01-103G07
Chromosome18 (Build37)
Map Location 64,701,412 - 64,701,705
singlet/doubletsinglet
Overlap geneAtp8b1
Upstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars
Downstream geneLOC629480, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G07.T7 (MSMg01no103_g07.b1)MSMg01-103G07.TJ (MSMg01no103_g07.g1)
ACCAG318271AG318272
length721738
length of high quality
(start - end)
294 (77 - 370)---
definitionCHROMAT_FILE: MSMg01no103_g07.b1 PHD_FILE: MSMg01no103_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:18 2005CHROMAT_FILE: MSMg01no103_g07.g1 PHD_FILE: MSMg01no103_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGAGAGCGCGGA
ATTCCATTTGTTTTCTCTACCATGAATATCAGTCATCTTTTTCATCCACA
GGGTGAGCCCCAGACACTCTTAGGAGCCAGAGATGATGCTGCAAAACTAG
CCCCGACAACCTCCGTTCTTCCTCTGTTGTAAGTACTAAGGCCGGAAAGC
AAATCGGCATACTTTCCCAGACTCTGCTGCCATTGGCCTCAATTGTGACT
GGGGTCCATTGTTTAGATCCACTCATGACTGGGAAACTGAGATGACCTGG
AGCCTAAAATCTCCTCCCCTCTTTGACATATCTGTAGCAGAGTTCATAAC
CATTTCCAGCTGCCCAGATGCTGACGGGCAGCCGTAAAGGCTTTTCAACT
GAGAAGTTCTTTAGAGAGACCTAAAGTGTAAAAGCTCCTCTAGTGAACGG
TCCAGAGGCTACTCAGCCCAGAAAGGAACCCATAAGAGGTCTGGGGAGGA
CATGTTAGGACAGTGGAGGGGGCAGTAGTGCACATGAGGTGTGTAAATAG
AAAGGAGGCCATGCCGAGAAGGATGGCTGCTTGTGTTCGTCATTATATTT
TCTCTACAAGACCTCACTGTCTTTGTTTTACTTAATTTTTAACGCCCGCC
ACATACTCTGGATTCTCTAACTCAAAAATGCATTCAATACCTATTGTAAG
AATGACCACTATTTTTGATAT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTATTAAAAAGCTTGAATAGG
TCTTTGTGTGTGTGTGTGTGTCGTGTGCTCCACTCTAGTCTAACACCTGG
CTCTAACATGACTCTGAACACCCCCCTCCTGCCCTCCGTCCGTCATACCT
CACTGACGTGCATGAAGAATGTTGGTTTTACGCATTCTGTGCTATGCACC
CGCTCATATTATTAGCTGCCGTCGCTTTGCTTGACTAATTCTACCGTTCT
TCCACCCCTCATCACTGCCTTACAATCGATCACTGTCTCTCCTATAACGC
ATACACCCTCCTGATTCACCCCTTACCTCGCTTGCCGTTCATTCCCCTAC
TACCACACCTTCAAATTTCCCCACCTATTCTGTTTTCGCCCTTTTCGCTT
TTGCCTTTCTGATTCCACATTTTGCCTCTAGAATCACCATGTTTTGTTTC
CACTGTCTTTTCCCTTTCCACCCCTGATTTGTCCTTCTCAATTATCTCGA
TTTTCCGACCTTTCATTCTTCTGTCTTCCCCCTTTCCCCCTTTACTCCCC
TTCTCCCCCTTTTTCCATTTTTCCCTCTACCCCCCCCCCTTCCCCCCTTT
TTTTTTCCTTTCCTTTTCCTACCCCCTTTTCACTCCCCACCCTTTCACCA
TTTTCCCCCCCCCTTTTCCTTTCCCCCCCATTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g07.b1 MSMg01no103_g07.b1 CHROMAT_FILE:
MSMg01no103_g07.b1 PHD_FILE: MSMg01no103_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:18 2005
         (294 letters)



>mm_chr18_64701212_64701905
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcagtcatctttttcatccacagggtgagccccagacactcttaggagccagagatga 60
           |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 201 tatcagccatctttttcatccacaggatgagccccaggcactcttaggagccagagatga 260

                                                                       
Query: 61  tgctgcaaaactagccccgacaacctccgttcttcctctgttgtaagtactaaggccgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgcaaaactagccccgacaacctccgttcttcctctgttgtaagtactaaggccgga 320

                                                                       
Query: 121 aagcaaatcggcatactttcccagactctgctgccattggcctcaattgtgactggggtc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aagcaaatcggcatactttcccagactctgctgccattggtctcaattgtgactggggtc 380

                                                                       
Query: 181 cattgtttagatccactcatgactgggaaactgagatgacctggagcctaaaatctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgtttagatccactcatgactgggaaactgagatgacctggagcctaaaatctcctc 440

                                                                 
Query: 241 ccctctttgacatatctgtagcagagttcataaccatttccagctgcccagatg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctctttgacatatctgtagcagagttcataaccatttccagctgcccagatg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)