Query= MSMg01no103_j21.b1 MSMg01no103_j21.b1 CHROMAT_FILE:
MSMg01no103_j21.b1 PHD_FILE: MSMg01no103_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:36 2005
(299 letters)
>mm_chr18_9871638_9872336
Length = 699
Score = 540 bits (279), Expect = e-158
Identities = 294/299 (98%)
Strand = Plus / Minus
Query: 1 agatttccttatgactaaaggcagcataaattctgtggagcagaggcaactaagataccc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agatttctttatgactaaaggcagcataaattctgtggagcagaggcaactaagataccc 440
Query: 61 agcatgggtggcagctgggatgagaagatggagtctcggagcatctctggaaaagctaaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 agcatgggtggcagctgggatgagaagatggagtctcagagcatctctggaaaagctaaa 380
Query: 121 attccatggagcaacctctgggcaaaacccttagtttgtatgctcgtaacagagaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attccatggagcaacctctgggcaaaacccttagtttgtatgctcgtaacagagaacaga 320
Query: 181 gcatgtcagataagcagaatgtgtatgtaatattttggaatgttagcctaaacagtgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcatgtcagataagcagaatgtgtatgtaatattttggaatgttagcctaaacagtgcct 260
Query: 241 tgactgcattctttggtaggctctggaaagaataacatgagcttggccatattacaaca 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgactgcattcacaggtaggctctggaaagaataacatgagcttggccatattacaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_j21.g1 MSMg01no103_j21.g1 CHROMAT_FILE:
MSMg01no103_j21.g1 PHD_FILE: MSMg01no103_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:36 2005
(576 letters)
>mm_chr18_9719086_9720061
Length = 976
Score = 1091 bits (564), Expect = 0.0
Identities = 573/576 (99%)
Strand = Plus / Plus
Query: 1 ttttgatgttcagagttggatgcaataaacaaatgttggaagaatggtgaatcttttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgatgttcagagttggatgcaataaacaaatgttggaagaatggtgaatcttttggt 260
Query: 61 gatgagagttaagatcaaaagtaggatattttctttgatctgaaatgtgggtgggtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgagagttaagatcaaaagtaggatattttctttgatctgaaatgtgggtgggtcttt 320
Query: 121 taccctctagtccctcactgcatccttcagctcctcactgtatcctctagttcctcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccctctagtccctcactgcatccttcagctcctcactgtatcctctagttcctcactg 380
Query: 181 catccttcaacccctcactgcacatccatcagccccttgctgcatccttcttgtccttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccttcaacccctcactgcacatccatcagccccttgctgcatccttcttgtccttac 440
Query: 241 catatccttcagtccctcactatgtcctttagtcttcaataattccttcagctcttcact 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 catatccttcagtccctcactatgtcctttagtcttcaatgattccttcagctcttcact 500
Query: 301 attcccttcacagttctgggtattaaactcagatcttcatgcttgtacgccaagcatatg 360
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 attcccttcacagttctgggtattaaactcagatcttcatgcttgtagggcaagcatatg 560
Query: 361 accaactgagctatatctttagccttagaaactgtactttaattttaccgttggggtttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaactgagctatatctttagccttagaaactgtactttaattttaccgttggggtttc 620
Query: 421 ccctaagctaataatatgcaatacagtccttttggcaattctgggcagcagcagcagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctaagctaataatatgcaatacagtccttttggcaattctgggcagcagcagcagccc 680
Query: 481 aatcatcacaatgaaaacaatcaatatagagtactgagttataggcatttgtaagctact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcatcacaatgaaaacaatcaatatagagtactgagttataggcatttgtaagctact 740
Query: 541 tttaggtgctgggaattaaacttggtcttctgtaag 576
||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaggtgctgggaattaaacttggtcttctgtaag 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
