TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTGATTACTAAGCAATTTTAATGAAAAACTGTGCAAATAGTC
TAAACATCTGTCAATGTTCCAGCAAGCATACAAATATGAGCAATTAAAAA
TTTTACATGTTTTTTTTTAATAATATAAAAATCTGATTTGGGCTTAATGT
AGGTCCATTGTATGAAATTTGTCCTCATGGACAGAGAAGTTCTGCTGTTT
TGTGAGAAAGATTGTTCTTGGCCTCAGCTGTTTAAGTTCCACATATAGGT
AAAAACACAAATCAATCTAACAAGATAAAACTCAAGGACTAGTGAGCTAG
TCCGGGAGGAAGGTGAAGGTACTTGCATGCCACTAATGCTGTGGACCTCA
CTATAACCCGTGTAGCCCACAGAGAGGAGAAAAGGGAACCAGTTCCTACA
AGATGTCCTCAGTCTTCCACACACATGCCATGGTACATATGTTCACACAT
AAATATAAATAAATAAATAAATAATAAATATAATAAAAAATTGAAAAAGA
GAAGAGAAAAATGAGATCTGTATGGAACTCATGTGTAATTACTCCTACCA
CACACATTAGTTTGATTAGGCCAACTCACTGTCAAACCCATAAGTGTTGT
TGATGACATAGCACATTTTCATATCTAGCCCTGATTTCTCCTGGTTCATT
CTCTTTAAAGAGACTCCCTAT

CATTAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCTCGCGGAATTCTCTCCTATCTCTTCCATACCTGATCCT
GCCCCCCCTTTTCTTCCCTCCCCTTCCTTTCTCCCTCCCAAGTTCCTCCC
TCCCTCTAGCTCCTCTGATTATTTTGTTCCCACTTCTATGTAGGATTGAA
GCATCCAAACTCTGGGCTTCGTTTTTCTTAAGCTCTATATTGTTTGTGGG
CTGTATCTTGGGTATTCTGAGCTTCTCGGATAATATTCACTTATCAATGA
GTAAATACCATTTATGTTCTTTTGTGATTGGGTTACCTCCTTCAGGATGA
TAGTGTTAACATGATTGTTTAAGGAGGAATTCATGGCATGTTCGGAAACA
AATAACATTCTCCTCTTTAGCAACATTTCCCAGTAGACCTTTTACTAGTT
ATTATAGACAATGTTTTCGGTGCTAGGAACGGGATATTTTTCCTAACTTT
TTTCCTTTTACACCCACTCTTATCTCTACTCCACTACTCTTCCTTATACT
TTTCTTTTTTCCTACTTTCCCCTATCCCCTTTAACCTATCTCCCCCCCTT
TTTCCATATTTCCCTCCTCCTCCCCTTTCTCCCCTTTTTATACTTGTAAT
TTCTTACCCCTTTTCATCCCAACCTTTTCCCCTTTTTTCATTCTCTTTTC
ATTCCCCCCCCCTCTCA

Query= MSMg01no103_k09.b1 MSMg01no103_k09.b1 CHROMAT_FILE:
MSMg01no103_k09.b1 PHD_FILE: MSMg01no103_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:38 2005
         (639 letters)



>mm_chr18_41131853_41132891
          Length = 1039

 Score = 1094 bits (566), Expect = 0.0
 Identities = 623/652 (95%), Gaps = 19/652 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgtgat-tactaagcaattttaatgaaaaactgtgcaaatagtctaaacatc 63
           ||||||||||||||  | |||||||||||||||  |||||||||||||||||||||||||
Sbjct: 791 gaattcattgtgataaaataagcaattttaatg--aaactgtgcaaatagtctaaacatc 734

                                                                       
Query: 64  tgtcaatgttccagcaagcatacaaatatgagcaattaaaaattttacatgttttttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgtcaatgttccagcaagcatacaaatatgagcaattaaaaattttacatgttttttttt 674

                                                                       
Query: 124 aataatataaaaatctgatttgggcttaatgtaggtccattgtatgaaatttgtcctcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aataatataaaaatctgatttgggcttaatgtaggtccattgtatgaaatttgtcctcat 614

                                                                       
Query: 184 ggacagagaagttctgctgttttgtgagaaagattgttcttggcctcagctgtttaagtt 243
           ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 613 ggacagacaaattctgctgttttgtgagaaagattgttcttgacctcagctgtttaagtt 554

                                                                       
Query: 244 ccacatataggtaaaaacacaaatcaatctaacaagataaaactcaaggactagtgagct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccacatataggtaaaaacacaaatcaatctaacaagataaaactcaaggactagtgagct 494

                                                                       
Query: 304 agtccgggaggaaggtgaaggtacttgcatgccactaatgctgtggacctcactataacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agtccgggaggaaggtgaaggtacttgcatgccactaatgctgtggacctcactataacc 434

                                                                       
Query: 364 cgtgtagcccacagagaggagaaaagggaaccagttcctacaagatgtcctcagtcttcc 423
           |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 cgtgtagctcaccgagaggagaaaagggaaccagttcctacaagttgtcctcagtcttcc 374

                                                                       
Query: 424 acacacatgccatggtacatatgttcacacataaatataaataaataaataaat------ 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 373 acacacatgccatggtacatatgttcacacataaatataaataaataaataaataaataa 314

                                                                       
Query: 478 -------aata---aatataataaaaaattgaaaaagagaagagaaaaatgagatctgta 527
                  ||||   |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 313 ataaataaataatgaatataataaaaaattgaaaaaaagaagagaaaaatgagatctgta 254

                                                                       
Query: 528 tggaactcatgtgtaattactcctaccacacacattagtttgattaggccaactcactgt 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggaactcatgtgtaattactcctaccacacacattagtttgattaggccaactcactgt 194

                                                               
Query: 588 caaacccataagtgttgttgatgacatagcacattttcatatctagccctga 639
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 193 caaacccataagtgttgttgatgacatagcacattttcatatctagctctga 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)