BAC Information

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BAC

Clone NameMSMg01-104H18
Chromosome18 (Build37)
Map Location 42,586,758 - 42,586,903
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3
Downstream geneLOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104H18.T7 (MSMg01no104_h18.b1)MSMg01-104H18.TJ (MSMg01no104_h18.g1)
ACCAG319085AG319086
length691698
length of high quality
(start - end)
145 (130 - 274)230 (74 - 303)
definitionCHROMAT_FILE: MSMg01no104_h18.b1 PHD_FILE: MSMg01no104_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:46 2005CHROMAT_FILE: MSMg01no104_h18.g1 PHD_FILE: MSMg01no104_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGC
GGAATTCAGTGTCTCCAACTTCTGAAAGAGGCTGGAGTGACGAAACACAT
TAAGGGTGGATTTCGAGAAACACGAATGAAGCTAAACGTTTATACATCAT
TCTTAAAAGTTGCACATGACTTACTGAAAAAAATCACACAGCATAATATA
TGCAGCATTGAGTTTCTATTTCCAATAGAAATTTTGGCCAGCCTTACAGT
TTCCTATCAGACAGAGGGCGACAAGCACATCTAATAGGCACTTAATGAAT
GCTAGCTAACATCTTTTTTTTTTTTATAGAGGGACTTTTCAGAAAAAGAA
CTTAAAATTGGTCTCCATGAGCAAAGTTATTACATCCAATCCTAGAAGCT
AATGATCCAACTTTAATATACAGAGAGTCTCTGGTACCCTCTCAGTGGTC
CAGGATTGATGGGCTGCCCCTGCGAGAGTGACATCTGTGACATTGCCCAC
TGTTGGATAGCCTTTGGCTGATCCCTCGGAGGAGATGGCTCAAGAGTGTT
CTCATAATCCTACATCGGGCTATTCATTGTGCCTTTGCTGACCCTTGCGC
GTCCTAGAGCCATTAGTGATTACGTTTCTATGTCAATCATGACGGGTTAG
CAATTCACGTCCACCCTCGTCTTTCAGTGGTCACACACTAC
NTCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATAGTATATGAGACACCGTTTTTC
AGACAGAGCATCTTATTGCCAGCTGCACCTGTGCTCAGACAGAGCACAGT
GCAAACCTACCATCTGGGTCAGTGGCTTTCAACATGTGGGTTGCAGCCCC
TTGGTGGGGGGGGGGTCAAAAGACCCTTTCACAGGGTCGATATCAGATAT
CCTGTATATCAAGATGTTTCCATTGCCATTCATAACAATAGCTAAATTAC
AGTTATGAGGTAGCTATTTAAATAATCTTATGGCTGGGGGTCACCCCAGC
TTGATGAACTGTGTTAACGTGTCGCATCATCAAGAAGGTTGAGAATCACC
GATCTAACGCTTCCAGTAGCTTGTCAGCACGACCAAACCATTTCAGCGCT
GACTACACCAGGTTCAGACTCCATTATCACACCCTACCCCCGTCATGAAC
ATACCAGACTAGTGTCGTCTCCATGTTAACCACCACTGCCGAGACCACAG
TTTTTCCATACCGTGACGTTGATCACCTATATATGTTTATACAACCCATT
TCGCTGTCCCCATCCCCTATGCTTTATCCCGTCTCACTTCTCACCCATAT
AATCGCCCTCCCGCCCTCCCCTTTGTTCTTTTATGTCTCCCCACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_h18.b1 MSMg01no104_h18.b1 CHROMAT_FILE:
MSMg01no104_h18.b1 PHD_FILE: MSMg01no104_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:46 2005
         (145 letters)



>mm_chr18_42586558_42587103
          Length = 546

 Score =  259 bits (134), Expect = 5e-74
 Identities = 143/146 (97%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaaacgtttatacatcattcttaaaagttgcacatgacttactg-aaaaaaatcaca 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agctaaacgtttatacatcattcttaaaagttgcacatgacttactgaaaaaaaatcaca 260

                                                                       
Query: 60  cagcataatatatgcagcattgagtttctatttccaatagaaattttggccagccttaca 119
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cagcaaaatatatgcagcattgagtttctatttccaatagaaattttggccagtcttaca 320

                                     
Query: 120 gtttcctatcagacagagggcgacaa 145
           ||||||||||||||||||||||||||
Sbjct: 321 gtttcctatcagacagagggcgacaa 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 546
Length adjustment: 8
Effective length of query: 137
Effective length of database: 538
Effective search space:    73706
Effective search space used:    73706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)