Query= MSMg01no105_c03.b1 MSMg01no105_c03.b1 CHROMAT_FILE:
MSMg01no105_c03.b1 PHD_FILE: MSMg01no105_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:39 2005
(499 letters)
>mm_chr18_47381891_47382789
Length = 899
Score = 824 bits (426), Expect = 0.0
Identities = 479/504 (95%), Gaps = 12/504 (2%)
Strand = Plus / Plus
Query: 8 attcatgccagagccttgtacaactgagccccttgaatttaaacggaacacccacatcca 67
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 196 attcatgccagagccttgtacaactgagccccttgaatttaaactgaacacccatatcca 255
Query: 68 ggatctgaattcatcactccctgcattcaa------------caaacaaacaaacaaaca 115
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 ggatctgaattcatcactccctgcattcaaaaaacaaacaaacaaacaaacaaacaaaca 315
Query: 116 aagaaaacactaccgacactaccaaaacagctttgatgactcctgtaccaaaggccaggt 175
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 316 aagaaaacactaccgacactaccaaaacagctttgatggctcctgtaccaaaggccaggt 375
Query: 176 agccaactttacataataaggccttcattattaactgtacccaggtttcaggttttcatg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agccaactttacataataaggccttcattattaactgtacccaggtttcaggttttcatg 435
Query: 236 gacacacacaaatgggactctctggctccatttcagtgtcctgtgcataggcaccttcca 295
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 436 gacacacacaaatgagaccctctggctccgtttcagtgtcctgtgcataggcatcttcca 495
Query: 296 tattgaactcttgacatccctctatactctactcttctgtagggaaggagcaaagtcccc 355
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 496 tattgaactcttgacatccctctatactctactcttccctaggaaaggagcaaagtcccg 555
Query: 356 aataatgtgttttgttgacatggacacgtccatgtcagggatgtctgtgcctccatgact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aataatgtgttttgttgacatggacacgtccatgtcagggatgtctgtgcctccatgact 615
Query: 416 cccatgggatggtaaaggcttccctgagtgagactgtgaaggatgggaaagcctttggtt 475
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 616 cccatgggatggtaaaggcttccctgagtgagactgtgaaggatgggaaagtctatggtt 675
Query: 476 ggagtgtgcatgttaaccgagtgt 499
||||||||||||||||||||||||
Sbjct: 676 ggagtgtgcatgttaaccgagtgt 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_c03.g1 MSMg01no105_c03.g1 CHROMAT_FILE:
MSMg01no105_c03.g1 PHD_FILE: MSMg01no105_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:39 2005
(169 letters)
>mm_chr18_47508229_47508796
Length = 568
Score = 319 bits (165), Expect = 5e-92
Identities = 168/169 (99%), Gaps = 1/169 (0%)
Strand = Plus / Minus
Query: 1 cactccatcacaacagactttctctaatgccttcctattttccccatttgccgctgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cactccatcacaacagactttctctaatgccttcctattttccccatttgccgctgtcac 309
Query: 61 aggcagcgccacatagtcctgcagcaggcaattagaattcactcctccccaaggctctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggcagcgccacatagtcctgcagcaggcaattagaattcactcctccccaaggctctgc 249
Query: 121 tctgccccatttgcaaagggcaccacaaggcatcagctgccatattaaa 169
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 248 tctgccccatttgcaaaggg-accacaaggcatcagctgccatattaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 568
Length adjustment: 8
Effective length of query: 161
Effective length of database: 560
Effective search space: 90160
Effective search space used: 90160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
