BAC Information

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BAC

Clone NameMSMg01-105D02
Chromosome18 (Build37)
Map Location 41,891,969 - 41,892,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D02.T7 (MSMg01no105_d02.b1)MSMg01-105D02.TJ (MSMg01no105_d02.g1)
ACCAG319613AG319614
length693707
length of high quality
(start - end)
484 (67 - 550)441 (93 - 533)
definitionCHROMAT_FILE: MSMg01no105_d02.b1 PHD_FILE: MSMg01no105_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:44 2005CHROMAT_FILE: MSMg01no105_d02.g1 PHD_FILE: MSMg01no105_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGACCGCGG
AATTCGACATCTCCAGTCCTGGACTCTTTGTATCTTGTGCACAGGATCTT
TGAGACCATATCTGATCCTCCGATGTGAATGATAAGCCCCTTGAAGAGTT
TTTTTATTGGCCTTTCAGTTCTATAGCACTTAACATGTTCTCGATAAATA
TGGGAGAAGGTGAGCAAATACATGTGTTGCTATTACATATTTCATGGAAA
AGAGGTTTTTCATAGATAAGAGCCATGCAGACTCTCTAACTGGATATCAG
AACATTTGATAGCACTTTTAAAACACAACACTGAGGTCCCATTTCCCAGC
TCCTCCACACTCAAGAATTACAGTAAATTTGAGCTAGGTTTAAGGACTTC
TTGTTTTAAAAAGTTTTTCCTGGAGTTTGACCCATTGTAGGTTTCAAAAC
TCTTGTAACAATCAATTTGTTTTTATTTTAACTAGCACACGTTTTCTTTA
ATGAATATTTTTATATATAAAATCTAATTTTTGCCAGTTGGCAATTATAT
ATCTGAATATAATCGCTTGCCCTTTCTATGTATTAAAACTTCCCTTCCCT
TCAGAGTTTGCTTTTATTTCCCATACGACTTAATTTTGCTTTTCAAAATG
ATATCTGAAAGCACACCTTCATTAACTCTGTTCCAGAAATATT
NCCCATGGGATTATATAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTTG
ATTTCCCTCAGTGATGGACAATGTCTTGGAAATATAACCCAAAGGAATCA
TTCCCCCCCCCACAGTTGTATGTCAATTTGTCATAAGATAGAGTCATTTG
GGAAAGGAGGACATTAGTAGATAAAATGTCTCCATAAGAATGGCCTGTAG
GCAAGCCTGTAGTGCATTTTCTTAATTAGTAATTGGTGTGGAAGAGCCTA
TGGTGAGTGGTGGCTAGTGATTTTGAGTTCTGTAAGAAAGTAGGTTTAGC
AAGTCATAAGGAGAAAGCCAATAAGTATAAGTCCTCTGTGACTTTCTTAT
GCATAGCTCCTTCCTCCAAGTTCTTGTCTTTCTTGAATTCCTGTCTTGAT
TTCCTTCAATGAGGAACAATGATATGGAAGCATAAGCTGAATAAATTCTT
TCCTCCCCAAGTTACTTTTGGTCATGATATTTCATCACTTTCACTATTAA
ACCTGACTAATATAGTAGCTCTAAGCCAGACCGTTTTATTACCGTAATAG
ACAAGAATCTACAATTTTCTTGATTGACATATTTTCTAATGTCTTGAACC
CTGTAAGTAAATGCCCCATATATGCATGCAAGCATACATGTCTGTCCCTA
CCTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d02.b1 MSMg01no105_d02.b1 CHROMAT_FILE:
MSMg01no105_d02.b1 PHD_FILE: MSMg01no105_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:44 2005
         (484 letters)



>mm_chr18_41891769_41892652
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctggactctttgtatcttgtgcacaggatctttgagaccatatctgatcctccgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctggactctttgtatcttgtgcacaggatctttgagaccatatctgatcctccgatgt 260

                                                                       
Query: 61  gaatgataagccccttgaagagtttttttattggcctttcagttctatagcacttaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgataagccccttgaagagtttttttattggcctttcagttctatagcacttaacat 320

                                                                       
Query: 121 gttctcgataaatatgggagaaggtgagcaaatacatgtgttgctattacatatttcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctcgataaatatgggagaaggtgagcaaatacatgtgttgctattacatatttcatg 380

                                                                       
Query: 181 gaaaagaggtttttcatagataagagccatgcagactctctaactggatatcagaacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagaggtttttcatagataagagccatgcagactctctaactggatatcagaacatt 440

                                                                       
Query: 241 tgatagcacttttaaaacacaacactgaggtcccatttcccagctcctccacactcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatagcacttttaaaacacaacactgaggtcccatttcccagctcctccacactcaaga 500

                                                                       
Query: 301 attacagtaaatttgagctaggtttaaggacttcttgttttaaaaagtttttcctggagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacagtaaatttgagctaggtttaaggacttcttgttttaaaaagtttttcctggagt 560

                                                                       
Query: 361 ttgacccattgtaggtttcaaaactcttgtaacaatcaatttgtttttattttaactagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgacccattgtaggtttcaaaactcttgtaacaatcaatttgtttttattttaactagc 620

                                                                       
Query: 421 acacgttttctttaatgaatatttttatatataaaatctaatttttgccagttggcaatt 480
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacattttctttaatgaatatttttatatataaaatctaatttttgccagttggcaatt 680

               
Query: 481 atat 484
           ||||
Sbjct: 681 atat 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)