BAC Information

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BAC

Clone NameMSMg01-105K12
Chromosome18 (Build37)
Map Location 46,976,186 - 46,976,552
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950
Downstream gene4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105K12.T7 (MSMg01no105_k12.b1)MSMg01-105K12.TJ (MSMg01no105_k12.g1)
ACCAG319952AG319953
length713698
length of high quality
(start - end)
367 (71 - 437)174 (74 - 247)
definitionCHROMAT_FILE: MSMg01no105_k12.b1 PHD_FILE: MSMg01no105_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:21 2005CHROMAT_FILE: MSMg01no105_k12.g1 PHD_FILE: MSMg01no105_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTTCAACTGTCCCAGGTCAGCTTTCTAATTCTTTCACCTGTAACCC
AGACTGAGATTTTTGCCACACCTACAAGTAGAGCCCTCTACATGGGACAT
TAGAGGAAAACATCTCAGGGTCCGGCTGCAGGTTTTCAGCTGTACACAGA
CCATGGGTCTAAGGTCCAGCTCTGTTTCCTCTCTTGAATTCCCTCGTGGT
GTCTATTATATTCCTCCAGCTGCAGTACCATGGCTGATCCCACAACAAAA
ACACTGAACTCCAAGGACACCATGTCTCCCAGATTTGCTGAGGGACTCTG
CACTGGCCTGGTTCCTGCCTAGAAAGGGGCTCAGACCAGCCAAGCCATCT
GAAAGAAACAGAGGTCATCCAAGCTGACTGAAAGCAGCAGAGCCCAGTCG
AGCTGCCTGGAAGAAGCTGCGACCAACCGAGCCACCTGGTGAACTCCAGG
TTCCCAGCTTGTGTGAGCTGTCACCCATGCTGGGGTGGGATTCTGGAGAC
ACAGCTGTCTTTGAGTCATTCCTTGATCCTGAAAGCCTCTCACCCATATT
TCCTGTAATTAAACCGCAACGGAAATTTATTTGGGTCACTAAAACCGAAT
TTTGGAAGATTTTCACACTTTGTTCCCGTCCATCGTGTTCCCTATTAGGG
GTGTAACAAGGTT
TCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAAAGCAAACTGTTTTATCTGTCTA
CCCTCTAAAGCGGCGTTCAAGACGTCCGTATCAGATGTGAGGAAGACAAG
ACTTTTATAGAGCTCAGAGGGAGGGAGTTTCCAAATGGGGGTGGAAATAG
TTTGCAGAACATAGCAGGTGGTCAAAACAAGGTAATCATAACAGATAGTC
AGAACAAGGGAATCTCGGTATCAGATAACCTTTTGGAACTAAGGCAGAGT
TACAAGATAATTATAAATATCTTTTGAAACAAAGACATGATTGCCATTCC
AGGAACAGGCAGTACAGACCCATTGGTAGCTAATGTCACAGGTGGGGCAT
AGCCCATTTCTTGACAAACAGAGGTTTACTCATAAACAGGAATGAAGCTA
ACTTGTCTGCACTGTAAGATGGCTTTCATGCCTAACATGGCAGCTGCTTG
GCTCTCCCCCAACCCCTTTAGGACATGGGAATGCGCCTATCATATCTTAT
CACTTCCTGTTGGCGCTTATGCTATTGTTTCGTTTTCTTCTTGCTTAATA
TCCCTTGACTCATCCTTTTCACTATGAATTTACCTTTAAGCTTCTCCCTA
CTTCAAACTTTCTTACCTCCTGCTATTCTCGTTCCTTGTCTTAGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_k12.b1 MSMg01no105_k12.b1 CHROMAT_FILE:
MSMg01no105_k12.b1 PHD_FILE: MSMg01no105_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:21 2005
         (367 letters)



>mm_chr18_46975986_46976752
          Length = 767

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctttctaattctttcacctgtaacccagactgagatttttgccacacctacaagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 567 tcagctttctaattctttcacctgtaacccagactgagatttttgccacacctagaagta 508

                                                                       
Query: 61  gagccctctacatgggacattagaggaaaacatctcagggtccggctgcaggttttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagccctctacatgggacattagaggaaaacatctcagggtccggctgcaggttttcagc 448

                                                                       
Query: 121 tgtacacagaccatgggtctaaggtccagctctgtttcctctcttgaattccctcgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtacacagaccatgggtctaaggtccagctctgtttcctctcttgaattccctcgtggt 388

                                                                       
Query: 181 gtctattatattcctccagctgcagtaccatggctgatcccacaacaaaaacactgaact 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtctattgtattcctccagctgcagtaccatggctgatcccacaacaaaaacactgaact 328

                                                                       
Query: 241 ccaaggacaccatgtctcccagatttgctgagggactctgcactggcctggttcctgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccaaggacaccatgtctcccagatttgctgagggactctgcactggcctggttcctgcct 268

                                                                       
Query: 301 agaaaggggctcagaccagccaagccatctgaaagaaacagaggtcatccaagctgactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaaaggggctcagaccagccaagccatctgaaagaaacagaggtcatccaagctgactg 208

                  
Query: 361 aaagcag 367
           |||||||
Sbjct: 207 aaagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)