BAC Information

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BAC

Clone NameMSMg01-106I11
Chromosome18 (Build37)
Map Location 57,786,862 - 57,786,991
singlet/doubletsinglet
Overlap gene1700011I03Rik
Upstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 4930511M06Rik
Downstream gene2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2, Slc27a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106I11.T7 (MSMg01no106_i11.b1)MSMg01-106I11.TJ (MSMg01no106_i11.g1)
ACCAG320591AG320592
length7532,462
length of high quality
(start - end)
130 (191 - 320)---
definitionCHROMAT_FILE: MSMg01no106_i11.b1 PHD_FILE: MSMg01no106_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:06 2005CHROMAT_FILE: MSMg01no106_i11.g1 PHD_FILE: MSMg01no106_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTGCATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCTTTGACCAACTGTAACTGTTTTGAAGAAAGCTCTT
CTATGTGGCCCAGACTGGCCTGACCCCATGGTCTTCCCAGCCAAGAATGA
CAGCCACTATCTTTCAGAATATTGTTGCTCACAGCGTGGCTTGAAATAGC
CAAGACAAATTAAAAATATCAGCCCTGGCCTAACTCAAATCTATTTTGTA
AAGGGCCCAGGACCTAAACAAATCAAAAGTTATCTTATCCTTATGCATCA
GACATGTTGATTCTGTTAAGACGTCTATTAAATCCAAACTATAACAACTT
AGCCAATGCCATAGCTAGCACAGTGACTGCTGGCTTCTTAGAAGACACTG
ATAGGCTTATCCTAAAACTCACATGGAATTTCCTGGGACCTATCCCTGCT
ATATCGGACATATACTGTCCTCCCACTGACACCTTGCACTGATCACTACC
AACGTCTCTACGCCAATAATGTGACTTACTCCTATATCCACATCACTCTT
CTATTAGAGCCTGCCTTGTTACTGTGATCTGCCTCTCTGTATTCTTGCGT
CACGCTGCCCACCTCGCTGTGGCCCGTTTCGTCCTTTATCCTTTTCCCCG
TCATGTCTTTCTTCCCCACCGTTTCATTTTGCCTCCATTCTCGCATCGAG
GTCCTCCCCCCCAGCTTATTTATAACCCCTCCCTCTCCTTGTCTTACCCC
TTG
ATTCTTTTTTAAAGTATAGCGTACGGCGNCGTXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTCATTTAGNTAAATCCTAAGGA
TGNTTTGNTTTCTTGTTTTAAATTGATTTGNTTTTGGTTTAGTTTTGNNT
TNNNNNNTTNNANATNTGTATACCCCCCTTTTAAAAAATTGTCCTTATTA
TATTTATTAACCCCCCATGCTCATTGAANTTTCCTCTGAATTGAATTATA
TGTTTCTTGACCTAGTTATAATTTAATAACTCTTTTAACATTCATATAAT
GTTTGATATACTGTCACATGTTATTATATTATATTTATATAATTGATATA
TAATTTTATTTAAATATATTATAGTTTATAATATGTAATGNTTTTATTAA
TTTAATATTTCTATTTTTTATAATAATTCATCTATATTTTGTGATAATCA
CCATATTATTAATTTTAATTATATTTTTATTTTATAATAATATATATGAT
TTTTAAACCATTACTTAAATTTATATTATATTTATTTTCTTTATATTATT
TTCAACTAATATATTAGTATAATAAATAAATGTATCATCAATAATTATTT
AATATTTTTTAATTATTTTTATTATATTTTATATTAAAATTTTATTAATT
CAATAATTATTAAATTTAAATTAATTTATTTTATTTTTATATATAAAATA
CACCTTTTAATAATTTATATATTAAAATTATATTTATACTTTTATTATAC
TATCAATTTAATAAATCTCCCACTACATTTTATTATACTATTTCATTATA
TACATATTTATAATTAAATTTAATTTATTTTTATGAATGATTAATTAAAT
ATATCAATATATATTTATATTTTATTATTTATGATCATACACTATTTTAT
ATTTATTATTAATTATTCATTTATATACATTGATATTAATTATATTACTA
TTAAATGTCTTTATCTTTATTATATAAAATATATATCTATATCATATTAC
ATTTATTAATAATATATATTTATATTATTTTTTATACTATCTAATAATTA
TAATATATTATATACTAACTTTTAATTCTTTATATATATTATATCTATTA
TTGTATATCTGTATTTTTAATTTTAATATAATATAAATATTATATATTTA
TATTTTATAATATTTTAATATTAAATATAAATTTTTATAATATATAATAT
TATATTATTGTATTATATATTTTTTATTTTTATATTAATATTATTAATTA
ATTATATATATTAATTTTATTTATATTTTTTATTATTATTTTTTATATAA
TTAATTATTATCTATAACAAAATTTATATATAATATATATATTTTATATT
TATATTATAATTAATATTTTAATTTATTATTAATAAATTTATCTAATTAA
TATATTATACTATAATATTATTATTNTACTTAATATACATATTTATTTTA
TTATATAATATATATTTATATTAATCTCTCCTATATATTTACTACATTAT
TCATTATATTCTTCTATTTCTGATTATTATTTATTTATTTATATTATATA
ATCTTATCAATATTTCTTATTCTATAATTATATTATATATGATAATTGAA
TATATTATAAAATTTTATTATTTTACTATTATAAATTTATTATATATTAT
AACTATTTATTATATTCATATATATATAAGTATATATATGTCTTATTAAT
ATTTATATTATTCTATATATCCATTTATTATACATAATAATCATTTACTA
TATTTAAGTTAATATTATATATTTATTATATACTATATTACTATTATTTT
CTATNTAATTATCTTATATTGATTATTTATATATATATCATATATACTTT
CTTATTATTTTATTATATATTTATAATACATCTTTGACTATATTATCATA
TTATTGATAGATAACACTACTATATTCTATTACTACTATTATAATATGAT
AAATTCACATTATTATTATAATTATATCTTTTCTTTGTATCTTTATTATA
TATCTAGTATNATTATAATATATTATAGATATAAGTACTATTCATAATAA
TNTTAACTTTTAATTATTCAATCTTATTAGTTATTATATATATATATGTA
TGAATAATAATTCCTATTTTGATATGAATCTTGTATATATGTATACTATA
CCTATATTAATTATAACAATAGCTTNATTTATTGTTAGTAATTNTTATAT
ATATTGTACAACTTATGTATATAATTTCTCTATTTAATTATATATATATT
GTATAATATAATTTATATATTATATTATATCTTGAATATATTTCTATTCT
GTATATATATATACTCATATTTATTCGTATCACATTTTATATATTATATT
CTACTCTATACTAATAATATCTATCTTATATCATACTCGTATATACTATG
TTAATATATACTATATTTCTCTATCTTATATCTATATCTATATTATATAT
ATATATATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_i11.b1 MSMg01no106_i11.b1 CHROMAT_FILE:
MSMg01no106_i11.b1 PHD_FILE: MSMg01no106_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:06 2005
         (130 letters)



>mm_chr18_57786662_57787191
          Length = 530

 Score =  236 bits (122), Expect = 4e-67
 Identities = 128/130 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaatagccaagacaaattaaaaatatcagccctggcctaactcaaatctattttgta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaatagccaagacaaattaagaatatcagccctggcctaactcaaatctattttgta 260

                                                                       
Query: 61  aagggcccaggacctaaacaaatcaaaagttatcttatccttatgcatcagacatgttga 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aagggcccaggacctaaacaaatcaaaagttatcctatccttatgcatcagacatgttga 320

                     
Query: 121 ttctgttaag 130
           ||||||||||
Sbjct: 321 ttctgttaag 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)