Query= MSMg01no106_n17.b1 MSMg01no106_n17.b1 CHROMAT_FILE:
MSMg01no106_n17.b1 PHD_FILE: MSMg01no106_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:53 2005
(581 letters)
>mm_chr18_86586525_86587506
Length = 982
Score = 1017 bits (526), Expect = 0.0
Identities = 568/582 (97%), Gaps = 1/582 (0%)
Strand = Plus / Plus
Query: 1 gaaactggacgccccagggagtttagaggtcccgtggggtggggagaggtgggacatcca 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gaaactggacgccccagggagtttagaggtcaggtggggtggggagaggtgggacatcca 260
Query: 61 tgtggagacagggtggttggaaagaggcatggaatgtggaacagactggggggtggtgaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tgtggagacagggtggttggaaagaggcatggaatgtggaacagattggggggtggtgaa 320
Query: 121 taaaatatggagtgtaaaaaataaattaattaaaaaaatacactgtgtaatcatcgtgct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taaaatatggagtgtaaaaagtaaattaattaaaaaaatacactgtgtaatcatcatgct 380
Query: 181 ttctaaggattttatcaatatgatggggtgtttttggagtctgtttgtgtaggttttaat 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaaggattttaacaatatgatggggtgtttttggagtctgtttgtgtaggttttaat 440
Query: 241 atttttctccctgtagtaatttactttactgtacttactttcacagtatatgatatcatt 300
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttctccctgtagtaacttattttactgtacttactttcacagtatatgatatcatt 500
Query: 301 gttggatgtgtcataggc-atatgcatgaacaattcccatcacaccattttctgtgaacc 359
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gttggatgtgtcataggccatatgcatgaacaattcccatcataccattttctgtgaacc 560
Query: 360 cagagtcagacccatcccacccactttcttttctgtaactttgtatatttggatctcatc 419
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 cagagtcagacccaccccacccactttcttttctgtaactttgtatacttggatctcatt 620
Query: 420 acctgccaagtgtagttgtggatgttgctaccttgctgcatcagatgagagcatatgtaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 acctgccaagtgtagttgtggatgttgctaccttgctgcatcagatgagagcaaatgtaa 680
Query: 480 acctctcgttcattatttcacagcccctttaacaaggacaggtggtaactgacacttgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctctcgttcattatttcacagcccctttaacaaggacaggtggtaactgacacttgat 740
Query: 540 tgcctccaactttttgttgcacgctgagacaggtaatttagt 581
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcctccaactttttgttgcacgctgagacaggtaatttagt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_n17.g1 MSMg01no106_n17.g1 CHROMAT_FILE:
MSMg01no106_n17.g1 PHD_FILE: MSMg01no106_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:53 2005
(603 letters)
>mm_chr18_86762413_86763414
Length = 1002
Score = 878 bits (454), Expect = 0.0
Identities = 481/490 (98%), Gaps = 2/490 (0%)
Strand = Plus / Minus
Query: 112 ttccctaaagaagcctagaagtagtaaataatcactaattataaaacacttgaatactgc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 ttccctaaagaagcctagaagtagtaaataatcactaattataaaacacttgaatactgc 943
Query: 172 ttaaaatgtatcttatttgcaagaaattacaataattctacattcatcttaaagataatg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ttaaaatgtatcttatttgcaagaaattacaataattctacattcatcttaaagataatg 883
Query: 232 tccttcacacttttgatcatattaaatataattcattattattactctgtttatttgata 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tccttcacacttttgatcatattaaatataattcattattattactctgtttatttgata 823
Query: 292 aaattatttttttcttttaaaaaggagctaagaaataacccaacaaggcctcatgaatgc 351
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 822 aaatta-ttttttcttttaaaaaggagctaagaaataacccaacaaggcctcaagaatgc 764
Query: 352 tagcaagttttctaccactgttatattggtaaaccccatagctgttttaacatattgaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tagcaagttttctaccactgttatattggtaaaccccatagctgttttaacatattgaat 704
Query: 412 tgtttcttgatatatttgaactttatatacatacatagttaaatgaacacaacaataaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 703 tgtttcttgatatatttgaactttatatacatacatagttaaatgaacacaacaaaaaaa 644
Query: 472 cttctgttccctaaaatgggggtgcacaaaccataataatggaaatttaatggctgaagc 531
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cttctgttccataaaatggggatgcacaaaccataataatggaaatttaatggctgaagc 584
Query: 532 attaaaataagtaattttgaggggaaatacaaaaatcatgtgaagtctgcctgcacccca 591
|||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||
Sbjct: 583 attaaaataagtaattttgagggggaatagaaaa-tcatgtgaagtctgcctgcacctca 525
Query: 592 gaaaggacaa 601
||||||||||
Sbjct: 524 gaaaggacaa 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
