BAC Information

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BAC

Clone NameMSMg01-108B02
Chromosome18 (Build37)
Map Location 80,601,509 - 80,601,798
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik
Downstream geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108B02.T7 (MSMg01no108_b02.b1)MSMg01-108B02.TJ (MSMg01no108_b02.g1)
ACCAG321614AG321615
length861704
length of high quality
(start - end)
79 (70 - 148)290 (79 - 368)
definitionCHROMAT_FILE: MSMg01no108_b02.b1 PHD_FILE: MSMg01no108_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:47 2005CHROMAT_FILE: MSMg01no108_b02.g1 PHD_FILE: MSMg01no108_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATTTGCGGTCGCTAAACGACTACTATATGCAGAGAGAGGGCGGAATT
CTCAGCAGTTTCCCCGAGCTAACTGGGACACAGACCTCCAAACTCATTTA
GAGGTTTGTGGAAGGGTTTTTCTTCTCTTCCTTCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTCAATTACTCACTCTAACACTTCTCATCTCTATT
TATATTCTTACCTCCTACCTATCTCTTTTTTTCCCCATTCCTATTACCCC
CCCCCCACTCCTTCACCTCTGTATTTCTATATCTACACTTCATTCTTCTA
ATATTTAATTCTCTCAATTACATTCTTATAATCTATTAACATATTACGAA
AACACGAACGAAACAAACAAACGCCCTATATCCTATAGTCTTCATCCCCG
TCTTTTATTTATTCCCTCGCTTGCCCGTTCGGTTTTTCGTTCGCTTTGTC
GAACTGTAATGTTGTGTCGCGGCGTTGTATGTGATCTCGCGTGCCTCGCC
GCTGCCCGTCCCGAAACACACCGGCGGGCGCGGAGAGCAGAAGAAGTGAG
AACGCGAACAGACAAAAGTAATACTATAGAGAGAAACTGACTTAGGAAGA
AATCATATATTGAGTATGAGAGCGGATAGTGTTAATGAGCGTACGCGATA
CTATCCACATAAAATGGAAGACGTCATATAAAAAGCATAGATAAATTCAA
AGAAAGGGGCACGCAAGAATATAGCTCCGGCCGCGTAATACATTATATTC
AGACGTCGCCTATGAGATTCACTAGTAATATGCGTATAGAAGAATGTGTA
TCAAATTAAATGATAAATTATAATATATATCNAACAAGTAAACGCACTCA
ATAATGAATCA
GTTTTGCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCCCGCCCCACCAACCAT
GCACACTCAAATTCCCAGTTCTCACCTGTTTGTCTAGGTGGAGTTGAAAT
TATCTCGTCAACCAAACCTTTACACTCTAAGGAGCATTCAGAGTCACAAC
AGGAGGTTTTGATTCTAATTTCCTCCCGAGACTCAGCTCTCTGAAGTGGT
TTTCTTATAAATAAACCAAATTGCTCACCTTCAGGGAATGCTAAAGTAAC
GGTTAATCTTCATTCTCAATTAGACTGAATTTATAACCACCTAGAAGATG
CAGAGGCTCGTTTGGTAGGGTCTGTGGCGGAGTTTTTCATAATAAAGGTT
TAACTACAGAGAGAATACTCGCCCTGAATGTAGGTTGGTGTCCTAGACTT
AACCAAAGAGAGATAATGTTAACTGATCAAAAGTATCTCTCAGCCCCTCC
GGTGCCAATGCAATGGGACCAGTGCCCCCCACTCCTACCTACGCAGCCAG
AGTCGCTCTGACCACCGTACCTTCCCTGAGCGTTGGGATGGATCCTCCGT
GCCCAGGTGCCAATCCATTTTGAAAACTGAGAAACATTTCTCATCTCTCC
TTGCCAACGGTCCCCCTGCGGCGTGACTGCTGTACAGGCTGTGAGACTTT
GTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_b02.g1 MSMg01no108_b02.g1 CHROMAT_FILE:
MSMg01no108_b02.g1 PHD_FILE: MSMg01no108_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:47 2005
         (290 letters)



>mm_chr18_80601384_80602073
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgccccgccccaccaaccatgcacactcaaattcccagttctcacctgtttgtctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 catgccccgccccaccaaccatgcacactcaaattcccagttctcacctgtttgtctagg 356

                                                                       
Query: 61  tggagttgaaattatctcgtcaaccaaacctttacactctaaggagcattcagagtcaca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggagttgaaattatctcatcaaccaaacctttacactctaaggagcattcagagtcaca 296

                                                                       
Query: 121 acaggaggttttgattctaatttcctcccgagactcagctctctgaagtggttttcttat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 acaggaggttttgattctaatttcctcctgagactcagctctctgaagtggttttcttat 236

                                                                       
Query: 181 aaataaaccaaattgctcaccttcagggaatgctaaagtaacggttaatcttcattctca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 235 aaataaaccaaattgctcaccttcagggaatgctacagtaacggttaatcttcattctca 176

                                                             
Query: 241 attagactgaatttataaccacctagaagatgcagaggctcgtttggtag 290
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 actagactgaatttataaccacctagaagatgcagaggctcgtttggtag 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)