TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTGAGGCATACTAAGCCTGTAAATGACGGTAAAGTGGGCTACATTTGA
AGTCAGAGATGTTTGGAGCCGTAGTTATATGAAAATATTGAAGAACTGTC
TCAATAAAGAGGAGAAGGAGGATGAGAGCTTGGGAGGGAGGCCAAACGGA
GGATGTTGAGCCTGCTATGTGCCTTCCACATAGCATCATTATTATTGATT
TTTATTAATTTTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGATA
GTTTTATACCAATTTGGCACATGCTAATGTTATCTGAAATGAGGGAACCT
CAGTTAAGAAAATGCCTCCATGAGATTGGGCTGCAGGCAAGCTTTTAGGG
CATTTTCTTAATTAGCAATTGAGGGAGGAGGGCCCAGACTGTTGTGGGTG
GTGCCATCCCTGGGCTGGTGAGAAGCAGGCTGAGAAAGTCATGGTGAACA
ATTCAGTAAGCAGCACTCTGCCATGGCCTCTGCATCAGCTCCTGCCTCCA
GGTTCCTGCCTGGTCCTTGTGTGAGCTTCTGGCCTCTTGGTTTCTGACGA
ACTGTTATATCGAACCCGCCTTGAACCAACACTTTCCCTCCCCTAGCCCC
CTTGTTATGGTGTTTCCTCATTTCTTTCTCATCCTTTCTCACCCTCCTTT
ATTTGCTTGCT

GATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCAATTCTTTGTTAAGCTCTGCACACCATTTTTAATGGG
GTTATTTGATTATTAGGAGTCCACCTTCTTGAGTTATTTATATATATTGG
ATATTTGTCCCCTATCTGATTTAGAATAGATAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGACTTACTGACGGTGTCTTTTGCCTTACAGAAGTT
TTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCTATTCAGGAATTTTCCCCCTGTACCCATATCTTCGAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
GAGATCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGAATG
GATCAATTCGCATTCTTCTACATGGTAACCGACAGCTGTCCAGCACCATT
TGTTGAAAATCCTCTTTTTTCCACTGGATGAATTTAGCTCCCTTGTCAAA
GATCAAGTGACCATAGGTGTGTTGGTTGATTTCTGGGTCTTCAATTCTAT
TCCATTGGTCTACTTGTCTGTCGCTCTACCAGTACCATGCAGTTTTTTAA
TCACAGTTGCTCTTTAGTAAAGCTTTAAGTCAGACATGGTGATTCCACTA
TAGGTTCT

Query= MSMg01no108_e24.b1 MSMg01no108_e24.b1 CHROMAT_FILE:
MSMg01no108_e24.b1 PHD_FILE: MSMg01no108_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:08 2005
         (424 letters)



>mm_chr18_39993796_39994620
          Length = 825

 Score =  741 bits (383), Expect = 0.0
 Identities = 414/429 (96%), Gaps = 9/429 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgaggcat-actaagcctgtaaatgacggtaaagtgggctacatttgaagtc 63
           |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 205 gaattcagtgaggcataagtaagcctgtaaatgatggtaaagtgggctacatttgaagcc 264

                                                                       
Query: 64  agagatgtttggagccgtagttatatgaaaatattgaagaactgtctcaataaagaggag 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagatgtttggagccgtagttgtatgaaaatattgaagaactgtctcaataaagaggag 324

                                                                       
Query: 124 aaggaggatgagagcttgggagggaggccaaacggaggatgttgagcctgctatgtgcct 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 aaggaggatgagagcttgggagggaggccaaacggaggacgttgagcctgctatgtgcct 384

                                                                       
Query: 184 tccacatagcatcattattattgatttttattaattttaagagtgtgtgtgtgtgtgtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccacatagcatcattattattgatttttattaattttaagagtgtgtgtgtgtgtgtgt 444

                                                                       
Query: 244 gtgtgtgtg--------ctggatagttttataccaatttggcacatgctaatgttatctg 295
           |||||||||        |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gtgtgtgtgtgtgtgtgctggatagttttataccagtttggcacatgctaatgttatctg 504

                                                                       
Query: 296 aaatgagggaacctcagttaagaaaatgcctccatgagattgggctgcaggcaagctttt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgagggaacctcagttaagaaaatgcctccatgagattgggctgcaggcaagctttt 564

                                                                       
Query: 356 agggcattttcttaattagcaattgagggaggagggcccagactgttgtgggtggtgcca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggcattttcttaattagcaattgagggaggagggcccagactgttgtgggtggtgcca 624

                    
Query: 416 tccctgggc 424
           |||||||||
Sbjct: 625 tccctgggc 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 825
Length adjustment: 9
Effective length of query: 415
Effective length of database: 816
Effective search space:   338640
Effective search space used:   338640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)