Query= MSMg01no108_n13.b1 MSMg01no108_n13.b1 CHROMAT_FILE:
MSMg01no108_n13.b1 PHD_FILE: MSMg01no108_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:50 2005
(392 letters)
>mm_chr18_59995346_59996138
Length = 793
Score = 698 bits (361), Expect = 0.0
Identities = 382/389 (98%), Gaps = 2/389 (0%)
Strand = Plus / Minus
Query: 6 gaattcattt-cttaccccacatgatgggaggagaatactgactcctccaagttgtcttc 64
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcatttccataacccacatgatgggaggagaatactgactcctccaagttgtcttc 624
Query: 65 tagcctccacaagtaagccagggcatgtacattgtcctcctgtctccttataccgtataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagcctccacaagtaagccagggcatgtacattgtcctcctgtctccttataccgtataa 564
Query: 125 gttttaaaagtaatgtgtcatgaagcaatgatcttaaccttgatacatattttacgcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 gttttaaaagtaatgtgtcatgaagcaatgatcttaaccttgatacatattttacacata 504
Query: 185 aattgaagttttgcaatatttttaattgttttgtttataaataggaa-tttttcacatgt 243
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 aattgaagttttgccatatttttaattgttttgtttataaataggaattttttcacatgt 444
Query: 244 ataaaatgaaatatggtcatatatgtataaactgatggcatgaccattccatggtatagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataaaatgaaatatggtcatatatgtataaactgatggcatgaccattccatggtatagt 384
Query: 304 taaggggacggtttttattgaagatactagagagaaaacagaggcatctgaaagtagaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taaggggacggtttttattgaagatactagagagaaaacagaggcatctgaaagtagaga 324
Query: 364 gaaggtagtaggctgaaattggccttaag 392
||||||||||||||||||||| |||||||
Sbjct: 323 gaaggtagtaggctgaaattgaccttaag 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 793
Length adjustment: 9
Effective length of query: 383
Effective length of database: 784
Effective search space: 300272
Effective search space used: 300272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_n13.g1 MSMg01no108_n13.g1 CHROMAT_FILE:
MSMg01no108_n13.g1 PHD_FILE: MSMg01no108_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:50 2005
(472 letters)
>mm_chr18_59842929_59843800
Length = 872
Score = 913 bits (472), Expect = 0.0
Identities = 472/472 (100%)
Strand = Plus / Plus
Query: 1 acttgaactaaaattaggagctcagcatagaaaatcaatgaaaccaaaagtctagacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaactaaaattaggagctcagcatagaaaatcaatgaaaccaaaagtctagacctt 260
Query: 61 aaaaggaccaattaaaatgaataaacctctagtttggctaggaaaagaaaaggttaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggaccaattaaaatgaataaacctctagtttggctaggaaaagaaaaggttaactg 320
Query: 121 ctatcagaataatagaaaacaatgtatttaaaccaattatttatcagggtctgggtggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatcagaataatagaaaacaatgtatttaaaccaattatttatcagggtctgggtggga 380
Query: 181 ttgagtccaagaatgcaaaattatttagcatacaaacagaagaaggaattccccagagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagtccaagaatgcaaaattatttagcatacaaacagaagaaggaattccccagagtg 440
Query: 241 agcatgggaatactatgcacagaaccatacctgccaggctcggaatgaggacagtgctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatgggaatactatgcacagaaccatacctgccaggctcggaatgaggacagtgctca 500
Query: 301 tggatcaactgccctgtcatactcagtaggatggcaacactgaacatgggggaacctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggatcaactgccctgtcatactcagtaggatggcaacactgaacatgggggaacctgga 560
Query: 361 gctgtcatacttgagaactgagttctgcacataaaccactttcatatgtcataattgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtcatacttgagaactgagttctgcacataaaccactttcatatgtcataattgtga 620
Query: 421 aggcattgcaccaatctactaagggataaagatgagggatagaaaaataaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcattgcaccaatctactaagggataaagatgagggatagaaaaataaca 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
