BAC Information

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BAC

Clone NameMSMg01-108P23
Chromosome18 (Build37)
Map Location 77,655,500 - 77,789,855
singlet/doubletdoublet
Overlap geneLoxhd1, Rnf165
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5
Downstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108P23.T7 (MSMg01no108_p23.b1)MSMg01-108P23.TJ (MSMg01no108_p23.g1)
ACCAG322293AG322294
length709704
length of high quality
(start - end)
512 (87 - 598)401 (84 - 484)
definitionCHROMAT_FILE: MSMg01no108_p23.b1 PHD_FILE: MSMg01no108_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:02 2005CHROMAT_FILE: MSMg01no108_p23.g1 PHD_FILE: MSMg01no108_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,655,500 - 77,656,010)(77,789,459 - 77,789,855)
sequence
ACTCCCACNTCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCA
AGAGGATCCGCGGAATTCCCTACCTCTGCTTAGAAAGACCTTTATGTCTT
CACCTTTTCATGAAAACTTATTGTCCAGCTGTACATGAATTCCCTCCCCA
AACAGATAGCTTATGTGTGACTGAATTCGGTCTTCTTTACATGACTGTCT
TAATTGTGGTTCTCTATTTTGATAAAACACCACGACTAAGAGCAACTTTG
GGGAGAAAGGAGTTTTCTTTGTCTTTAGATCTACATCACAGTCTATCACC
TAAGGAATTAAGGACAGGAAGTCAAGGCAGAAACTTGGAAGCAGGAACTG
AGGGAAAGCCAGCCCATATGAGGTGCTGCTTGCTGTCTTGTTCCCCATAG
CTTGTTGAGCCTGTTCTCTAATAGTACACAGACCACAAGTCAAGGAATGG
TGCCACCCATAGTGAACTGGACCCATCCACATCAGTCATCAATCAAGAAA
ATGGACCATGGCCTCGCCCTCAGTCCAGTCTGTTGGGAACATTTTCTCAG
TTGAGTTTTCCTCTTCTAAAGTGTGTCTATCTTGTATCAAGTTGACATAA
AACCAGCCAGCACGCTTGACATTTACCTCCGTGTGTTCTACTGCCTTGAC
TTTTCCTTGAAGCTAACCTGCGATATAACAGACAACTAGTAAAGTTAATA
GTATTTAAT
GGGTATNTCTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTTAACCCCTGGA
TTTTCTGCCTTCTTTTCTCTTTTCTGTCCTCTGTGTCCCGTGATGCCCTC
ACCCTGCCATAGCAGATTCCTGAGATAACTACCCCAACAGAGAGGCAGAG
GCCATTAGCCAGGTACACCTCCAGGCCTAACCATGCCACCCATGCTAACA
CGTCAAGCCAGGCACAGAACTTGGGTCCACACACTACTTATCACTGTCCT
CAGGGCTCTGCTGTTTCCAAGAACCTTTGTGAGGCACAGACGGAGAGGTG
GTGGTGGATGCCCCTGCTGATTGATTGATGTGCTCTCTGTCACAAGGCCT
CTGAGCAATCGTACAGGCTGGAGAGCGTATCCAGGAGGAGGTGGATCTTA
AGCTGGGACAGAAGGTCTACTCTGTGTCTGCGGGAAGTGGGAGAAAGGGG
GCACTGATTATAGAGACCATGTAAGGGGCATTAGTAAGTTATTGGGCCTA
GTGGGCCCAGTCTTAGGGTCTGAACATCAGGTTTGAGCACAGTCTATGAA
GGTGGAAAGTTTGCCCTCACGCATGGTCCTTAGCCCCGCTGATGTGGTTA
TCCCACTCTGTTACTCCTTTTGCGGACCACCCCAGATGTAATGTCATCCA
CTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_p23.b1 MSMg01no108_p23.b1 CHROMAT_FILE:
MSMg01no108_p23.b1 PHD_FILE: MSMg01no108_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:02 2005
         (512 letters)



>mm_chr18_77655299_77656210
          Length = 912

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   acctttatgtcttcaccttttcatgaaaacttattgtccagctgtacatgaattccctcc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acctttatgtcttcaccttttcatgaaaacttattgtccagctgtacatgaattccctcc 261

                                                                       
Query: 62  ccaaacagatagcttatgtgtgactgaattcggtcttctttacatgactgtcttaattgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccaaacagatagcttatgtgtgactgaattcggtcttctttacatgactgtcttaattgt 321

                                                                       
Query: 122 ggttctctattttgataaaacaccacgactaagagcaactttggggagaaaggagttttc 181
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 ggttctctattttgataaaacaccatgactaagagcaactttggggagaaaggagttttc 381

                                                                       
Query: 182 tttgtctttagatctacatcacagtctatcacctaaggaattaaggacaggaagtcaagg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttgtctttagatctacatcacagtctatcacctaaggaattaaggacaggaagtcaagg 441

                                                                       
Query: 242 cagaaacttggaagcaggaactgagggaaagccagcccatatgaggtgctgcttgctgtc 301
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caggaacttggaagcaggaactgagggaaagccagcccatatgaggtgctgcttgctgtc 501

                                                                       
Query: 302 ttgttccccatagcttgttgagcctgttctctaatagtacacagaccacaagtcaaggaa 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 ttgttccccatagcttgttgagcctgttctctaatagtacacagaccacaagccaaggaa 561

                                                                       
Query: 362 tggtgccacccatagtgaactggacccatccacatcagtcatcaatcaagaaaatggacc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tggtgccacccatagtgaactggacccatccacatcagtcatcaatcaagaaaatggacc 621

                                                                       
Query: 422 atggcctcgccctcagtccagtctgttgggaacattttctcagttgagttttcctcttct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atggcctcgccctcagtccagtctgttgggaacattttctcagttgagttttcctcttct 681

                                          
Query: 482 aaagtgtgtctatcttgtatcaagttgacat 512
           |||||||||||||||||||||||||||||||
Sbjct: 682 aaagtgtgtctatcttgtatcaagttgacat 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no108_p23.g1 MSMg01no108_p23.g1 CHROMAT_FILE:
MSMg01no108_p23.g1 PHD_FILE: MSMg01no108_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:02 2005
         (401 letters)



>mm_chr18_77789259_77790059
          Length = 801

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcttaacccctggattttctgccttcttttctcttttctgtcctctgtgtcccgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 597 agttcttaacccctggattttctgccttcttttctcttttctgtcctgtgtgtcccgtga 538

                                                                       
Query: 61  tgccctcaccctgccatagcagattcctgagataactaccccaacagagaggcagaggcc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgccctcaccctgccatagcaaattcctgagataactaccccaacagagaggcagaggcc 478

                                                                       
Query: 121 attagccaggtacacctccaggcctaaccatgccacccatgctaacacgtcaagccaggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 477 attagccaggtacacctccaggcctaaccatgccacccatgctaacacgtcaggccaggc 418

                                                                       
Query: 181 acagaacttgggtccacacactacttatcactgtcctcagggctctgctgtttccaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acagaacttgggtccacacactacttatcactgtcctcagggctctgctgtttccaagaa 358

                                                                       
Query: 241 cctttgtgaggcacagacggagaggtggtggtggatgcccctgctgattgattgatgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctttgtgaggcacagacggagaggtggtggtggatgcccctgctgattgattgatgtgc 298

                                                                       
Query: 301 tctctgtcacaaggcctctgagcaatcgtacaggctggagagcgtatccaggaggaggtg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 tctctgtcacaaggcctctgagcaatcgtacaggctggagagggtatccaggaggaggtg 238

                                                
Query: 361 gatcttaagctgggacagaaggtctactctgtgtctg 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gatcttaagctgggacagaaggtctactctgtgtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)