Query= MSMg01no109_a19.b1 MSMg01no109_a19.b1 CHROMAT_FILE:
MSMg01no109_a19.b1 PHD_FILE: MSMg01no109_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:07 2005
(551 letters)
>mm_chr18_75691762_75692711
Length = 950
Score = 748 bits (387), Expect = 0.0
Identities = 402/407 (98%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcctggcctattggtgaactgcattgccaaaacaatggcccttttctgccag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaattctttcctggtctattggtgaactgcattgccaaaacaatggcccttttctgccag 550
Query: 65 atacttcacaggctgttcctgtcagacaaagactttttcatgaccacaatacaatggtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atacttcacaggctgttcctgtcagacaaagactttttcatgaccacaatacaatggtta 490
Query: 125 ggatcagaactctgagtcctgtccactaaggtacactaaatctgtgctataacccattaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggatcagaactctgagtcctgtccactaaggtacactaaatctgtgctataacccattaa 430
Query: 185 actctgcagtcctacagtcttcccagacacagggatcctgtctgtctgttaacctaggcc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 429 actctgcagtcctacagtcttcccagacacagggatcctgtctgtctgttaacctaggac 370
Query: 245 aggtctctggcctctgagaatcatggccttgactgtgctcagggaggacctatgtctttg 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggtctctggcctccgagaatcatggccttgactgtgctcagggaggacctatgtctttg 310
Query: 305 tagtcagcttgtccccaggtctggctccaggcatgtgttcatgttctggtcatcctacca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tagtcagcttgtccccaggtctggctccaggcatgtgttcatgttctggtcatcctacca 250
Query: 365 ggaggcggtgctgtccttggctcctgggttgattgtggttacctggt 411
||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 ggaggtggtgctgtccttggctcctgggttgattgt-gttacctggt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space: 508540
Effective search space used: 508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_a19.g1 MSMg01no109_a19.g1 CHROMAT_FILE:
MSMg01no109_a19.g1 PHD_FILE: MSMg01no109_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:07 2005
(501 letters)
>mm_chr18_75582136_75583030
Length = 895
Score = 919 bits (475), Expect = 0.0
Identities = 492/501 (98%), Gaps = 6/501 (1%)
Strand = Plus / Plus
Query: 1 cttctcacaaacaaaaggggtgtctagagaaagccagccagagcaaggctttaaggagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctcacaaacaaaaggggtgtctagagaaagccagccagagcaaggctttaaggagca 260
Query: 61 gtacccaggcacacggccacgtagtcccagaggacatacatgaagctcctgctcttaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacccaggcacacggccacgtagtcccagaggacatacatgaagctcctgctcttaacc 320
Query: 121 cccctgttatgaccaccagcagtaaatagcaaaacccaaaacaataaatccagacaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccctgttatgaccaccagcagtaaatagcaaaacccaaaacaataaatccagacaaggg 380
Query: 181 ggcgctaaccatgatggctttacctagctgagcggctgcggtgggggacctggcggtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcgctaaccatgatggctttacctagctgagcggctgcggtgggggacctggcggtaaa 440
Query: 241 taaacgagcaaaaagactgtaaatcaccctgggagaccagatcgatacacagggaacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacgagcaaaaagactgtaaatcaccctgggagaccagatcgatacacagggaacttg 500
Query: 301 acccaactctcaccagggagtgtgtgtgccaatagtcctgaccaacggggtggggactct 360
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 501 acccaactctcaccagggagtgtgtgtgccagtagtcctgagcaacggggtggggactct 560
Query: 361 ccaggctctgctggtacggagaagaggaaaccctgtttggaacacagggtcgcagcccgg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ccaggctctgctggtacggagaag------ccctgtttggaacacagggtcgcagcccgc 614
Query: 421 ctctgctgggagcttgcggagctaccccggggctggtggctggatctctctgagctgcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctctgctgggagcttgcggagctaccccggggctggtggctggatctctctgagctgcct 674
Query: 481 tcacttgggctgtgaatcaaa 501
|||||||||||||||||||||
Sbjct: 675 tcacttgggctgtgaatcaaa 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 895
Length adjustment: 10
Effective length of query: 491
Effective length of database: 885
Effective search space: 434535
Effective search space used: 434535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
