BAC Information

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BAC

Clone NameMSMg01-109B13
Chromosome18 (Build37)
Map Location 50,273,154 - 50,273,434
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8
Downstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B13.T7 (MSMg01no109_b13.b1)MSMg01-109B13.TJ (MSMg01no109_b13.g1)
ACCAG322365AG322366
length716721
length of high quality
(start - end)
228 (70 - 297)281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no109_b13.b1 PHD_FILE: MSMg01no109_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:11 2005CHROMAT_FILE: MSMg01no109_b13.g1 PHD_FILE: MSMg01no109_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATAATTGCGGCGCTAAACGATCACTATTTCTGACTGCCGCGGAAT
CTTCTTCTTTCGTCATCCCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCC
TCCTTCTCCTCCTCCTTCCACTATTCCTATTATTTGTAGGTTTGGTCCTT
TCATAGTGTCTCAGATTTTCAGGATGTTTCATGTCAGGAATTTTTTAGAT
TTAACATTTTTGTTGATCGACATATCCATTTCTTCTATCATGCCTGATAT
TCTCTCTTCCGTCTCTCATATTTTGTTGGTGAAGCTTATGCCTGTCGTTT
CTGGACACAATTTTTTATCTTTCAAAAAACCAGAACACACTCAGATAAGA
ATTCTTTATTGCCCCCCCCCCCACCCTCTGGACTTGGGCAGATTTATTTG
TTTCCTTGACCCGTTCGTTCGTTAGATCGTTCTTGCCTATACTTAAGAGC
ATATATTGCCTTCCTACAGTTCGTCGCAGTTCCGCTAATTTCTTCTGGAG
ACATTACGCATGTCCTCATTAAGGCGTCCTACCCATCTTAATAAGTAAGC
GATAAGATCGCGCTTCTGTGTCCTGTTTTATTTCGGGTAAGGTTGGTGTC
GGAAATGGGGATGTAATCTGAGTCCTTAATGTAGTGGATAGCGGCCTGCG
CGGCGGCTTTTTTTTTTTTTTTATTTCGGAGAACCGATAGGCGTGGGTGC
GAGTGCCTGGCGCACA
ACACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAAAACAAAAAGATGCCAAA
TTTCTCCACTTCTGTTTCAGCAGAGGGAAACAACGTAAAAAAATTGAAAT
GTGATGTCTAAATTCATATGCATATTCTCGTGTTGCACACAGGGAGGAAC
AGAAATAATGACACAACTTGAGATGTCCCTCTTTTAAATCCTGAATGGGA
TTAACATATCTTAATTAAATGCATCAGAAATGGACTCTGTTTGCAAAGGA
AGACGAACTGGCGGCATGGTTTAAATGTTCTATGTTTCTTTAGGGACCTT
CTCAATGGGTAGCGTCTAGAGCATTTGTTAAGATGAGACCACTTCAGGCC
AGGGGTTTTGAATGGTCTCCTTTAACTGACCTGATGCTTCCATGAGGTCA
CGTCGACTGTGTTATTTGTCTCATCCTTCATGCTGTTAAAAAGAACGCAT
CTTCACCAAGATTCTTCCCTCACATTGCTTAAGTCTGATTACATTTCCTT
ACATAAATTCATTTTATAATATATTGCAGTCCACTACCTCAAAATTAATC
TTTACTCGCTGTCGATATGTTTAATGTACAATTTATAAATATTAATATAT
ATATTATTCTCATTGGAAAAACTAAATCATCATTTCTTAATTATATACGA
AACCCTATTAACAAAAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b13.g1 MSMg01no109_b13.g1 CHROMAT_FILE:
MSMg01no109_b13.g1 PHD_FILE: MSMg01no109_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:11 2005
         (281 letters)



>mm_chr18_50272954_50273634
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaaaacaaaaagatgccaaatttctccacttctgtttcagcagagggaaacaacgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agtaaaaacaaaaagatgccaaatttctccacttctgtttcagcagagggaaacaacata 260

                                                                       
Query: 61  aaaaaattgaaatgtgatgtctaaattcatatgcatattctcgtgttgcacacagggagg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaattgaaatgtgatgtctaaattcatatgcatattctcgtgttgcacacagggagg 320

                                                                       
Query: 121 aacagaaataatgacacaacttgagatgtccctcttttaaatcctgaatgggattaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagaaataatgacacaacttgagatgtccctcttttaaatcctgaatgggattaacat 380

                                                                       
Query: 181 atcttaattaaatgcatcagaaatggactctgtttgcaaaggaagacgaactggcggcat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atctcaattaaatgcatcagaaatggactctgtttgcaaaggaagacgaactggctgcat 440

                                                    
Query: 241 ggtttaaatgttctatgtttctttagggaccttctcaatgg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttaaatgttctatgtttctttagggaccttctcaatgg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)