BAC Information

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BAC

Clone NameMSMg01-109F15
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109F15.T7 (MSMg01no109_f15.b1)MSMg01-109F15.TJ (MSMg01no109_f15.g1)
ACCAG322560AG322561
length715716
length of high quality
(start - end)
215 (82 - 296)255 (80 - 334)
definitionCHROMAT_FILE: MSMg01no109_f15.b1 PHD_FILE: MSMg01no109_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005CHROMAT_FILE: MSMg01no109_f15.g1 PHD_FILE: MSMg01no109_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GAATAATCATAATTTGCGGCGNAAAAAGAATCACATTCGTACGGGGCGCG
GAATCCTTAGTTCCCAATACAAGGTNGAACNTATCCTGCTCCCATTAATT
GGGGTACTCTACTGTGGCAAGGGTACTTGCCATGTCTTAACTTGAAAACC
AGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCTTCCAAGTAAGATGTCA
GTTCCCAGGGAGGCCTCGAGAACTTATACTTTACTCACTCACACCCTACT
CTTAATAGAAGTCTGGTTCGAAGTAGTCTCTGCACTGAATCGGAGGCGCG
GGAGTCTCTCTTTTTTAGTGTTTCGGGGGTCCGTCCCCAGGGCAGCTTCT
AATATTTTATGCCTCACCACCGCACACATGGGTTTGTGTAGGAAATGCTG
CTGGCTGGACAGATTGGGTCTTAGTCGATTGCTGATAACTTTCGAACAAT
GGAAGCTTCCATTTTGATTGTTTTCCGAGAACAAATTCAACAAGAATATG
TTACCAATTCTGACTTAATTGTTTCTATACAAGTATTGAGCATGTGTCCT
TTATTTAGCATGTTAACAGCACCATATGGCATTTCTACCCTGTGCAACAG
GTTACCTAGTGACTAATTTAATCATAATTAAGGGCTGTCAAAATACAACT
GGGCCATAATATTATTACCTATATATTAATCCGCCCACATGAATTTGTCT
TCTTGACTATTCTAA
NCCCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCA
GGTCCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGC
TCATACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAAC
AGAAAGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACC
CTGTCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATG
GTTTGGAATTTCTACTTCATGTTTTTTTTTTTTTTTTTGAGACAGGGTTT
CTCTGTATAGCCCTGGCTGTCCTGGCACATTGTATTATATTACACACTTT
GTGTGAATGCGTGTGTGTCTCCGTGAGTGAGTTACACCTCTCCTGCGACT
GACGTAACTAGCACTCAAGCGACTTTACGTTTGTATTCTAGCAATATATA
TACTCGAATTCCAATTCTTTCTTATGTCTTATTTCATCTTATCCTCACCT
ATTTTAATTTATCTCATTATAAAACATCCCACTTTATATAATAATAATCT
TATCTTAATTTATTTAAATATTTTTATATTAAAAAACAAACTATCCTCTA
CTCACACAATCCAACAAACTAACACAAACAACACAGTCTTTCAGCATCCC
CTGTCATCTCCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_f15.g1 MSMg01no109_f15.g1 CHROMAT_FILE:
MSMg01no109_f15.g1 PHD_FILE: MSMg01no109_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:32 2005
         (255 letters)



>mm_chr18_40467476_40468129
          Length = 654

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 654
Length adjustment: 9
Effective length of query: 246
Effective length of database: 645
Effective search space:   158670
Effective search space used:   158670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)