Query= MSMg01no109_m19.b1 MSMg01no109_m19.b1 CHROMAT_FILE:
MSMg01no109_m19.b1 PHD_FILE: MSMg01no109_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:09 2005
(531 letters)
>mm_chr18_54197608_54198539
Length = 932
Score = 928 bits (480), Expect = 0.0
Identities = 522/540 (96%), Gaps = 10/540 (1%)
Strand = Plus / Plus
Query: 1 ttgtgtattaagtagtttattggctgatctgtcaccccagccctaggtctcacatttctt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgtattaagtagtttactggctgatctgtcaccccagccctaggtctcacatttctt 260
Query: 61 gctgagtcctatgat-cactcttcatatctccagcatgcctctgggtatcatgagattcc 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgagtcctatgatacactcttcatatctccagcatgcctctgggtatcatgagattcc 320
Query: 120 agccctctaatgtgcctgggttattgaacttcaggtcctcggtgctcagctttttagcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctctaatgtgcctgggttattgaacttcaggtcctcggtgctcagctttttagcct 380
Query: 180 ctcagctgctgtttccagctgtgcttttggtaaactgacagttgtcagctcacttagaag 239
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 381 ctcagctgctgtttccagctgtgcttttggtagaccgacagctgtcagctcacttagaag 440
Query: 240 aaagatcctcttacagatctcaggatctttctgctgtggcccccgctctttgatagtttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaagatcctcttacagatctcaggatctttctgctgtggcccccgctctttgagagtttg 500
Query: 300 ctttgctgtctcagtcttttggctgccaagatttggatctctgccatgtcagacctttag 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgctgtctcagtcttttggttgccaagatttggatctctgccatgtcagacctttag 560
Query: 360 gaccactgcttttttggaaagcgtatttgtccctcatctctgaagcatcggaaatgttct 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccactgcttttttggaaagtgtatttgtccctcatctctgaagcatcggaaatgttct 620
Query: 420 gaggtggggaaaagtcatgctgtctgtaaactttgtttgctgtcacatagaccccc---- 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggtggggaaaagtcatgctgtctgtaaactttgtttgctgtcacatagaccccccccc 680
Query: 476 ---actgga-tcaccctgtcgctgacttctatggcgcgtctaaacagttttcaatggtgt 531
|||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 cccactggagt-accctgtcgctgacttctatggggcgtctaaacagttttcaatggtgt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_m19.g1 MSMg01no109_m19.g1 CHROMAT_FILE:
MSMg01no109_m19.g1 PHD_FILE: MSMg01no109_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:09 2005
(541 letters)
>mm_chr18_54326435_54327376
Length = 942
Score = 893 bits (462), Expect = 0.0
Identities = 522/542 (96%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 1 taggcaaatgaaaaaaggaaagaaaacctataggatatattgtgcaattcacaaaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taggcaaatgaaaaaaggaaagaaaacctataggatatattgtgcaattcacaaaatttt 683
Query: 61 aagattgactgcacattagaaaataacactttaagttcttgagattagtaattgtatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagattgactgcacattagaaaataacactttaagttcttgagattagtaattgtatcct 623
Query: 121 gattgcttaagaaaatattcttgttcttagcaaaaaccttgcaacaaattgaggaaaaat 180
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 622 gattgcttaagaaaatattcttgttcttagcaaagaccttacaacaaattgatgaaaaat 563
Query: 181 ggatttgatatctataaattactcttaaatgatttaaggaataaaattatgggaatagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 562 ggatttgatatctataaattactcttaaatgatttaaggaataaaattataggaatagaa 503
Query: 241 ttatagtgggattttttt-aaagaggacataacctgttcaccatttgaatttcacttact 299
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 502 ttatagtgggattttttttaaagaggacataacatgttcaccatttgaattccacttact 443
Query: 300 gataacaactgcaaaactccattcattagcaaatattcgaataactatgaactttccatt 359
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 442 gataacaactgcaaaactccattcattagcgaatatttgaataactatgaattttccatt 383
Query: 360 gctgacaatagttatcagtcaatagagtatttttttttcagaaagctttagtcaaccatc 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 actgacaatagttatcagtcaatagagtttttttttttcagaaagctttagtcaaccatc 323
Query: 420 aattctttattttgggttatattatagatacaccccagttacagcaatcctttgaggact 479
|| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct: 322 aactctttattttgggttatattataggtacatcccagttatagcaatcctttgaggact 263
Query: 480 tgtccttagtgcctcagaggagagaatgagctctacagcatggctctattgagctccagg 539
| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 tctccttagtgcctcagagaatagaatgagctctacagcatggctctattgaggtccagg 203
Query: 540 at 541
||
Sbjct: 202 at 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
