AAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATGCGCG
GAATTCACACTCATACCGGAAGAAGCCTTTGTAACTTTTTAGTCTGCCGC
ATATAGCATGGCTTTGCCATTCTCACAGTGAGGCAGAGTCCTTGTTATGG
CCATGCCTGTGTCAACAATCCATGCTCACTCAGGATTTCATTTGCTCTTT
ATACCTTCATGCAGGGGCTGCCTTGGCTCTGTAAGTGCTTTAGATACATT
ATTCATAAGAATAATAATATTTCCTTTGTCTTTTGAAATACTACATCCAT
TATAACCAGTTGATGCTTACCATAAGGAGGCTAGTGGAATTCACTATTTA
TATTTTTTTATAATGAAGGAAACAAAGCTTAGAAGAATATAATTTTTTGT
GAACAAAATTTCTATTATTAATCTTAATTTTTTCAAGTATTTTCTCTTTC
CCAATTCTCACACTCCCATTTTTTTAAGTGAGATAACATCATAAAAGAGA
CATTTGTGCTAGTCTGCATGTCTAACTCTGTTGAACTTTGACTCTTTAGC
CAGAGGAGAAAATGTGAATGATCAGAGATGTTGTTTCAGGACTTTTCCTG
NGATGGAGTTTGAACATGCTAGGCTGCTCCCAGCCCTGCCAAAATGCTGA
GGAGGATTCTGCTGCAGACTGCACAGCCTCTCAGCTGTGTCACCAGCAGC
CTGCTCTCCCTGGCACACCGTGCA

NCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGCCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAATGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTGGGCATACATCCAGAAGATGCCCCAACTGGTAAG
TAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTAGAGGGCATCTACCTGAG
TGAGGTAACACTTTCCCAAAGGAACTCACACAATATGTACTCACTGATAA
ATGGATATTAACCCCAAACCTAGGATACCCAAGAACATGAAACCATTTCC
TAAAACCATGAACCTCAAGACAATGA

Query= MSMg01no109_p19.b1 MSMg01no109_p19.b1 CHROMAT_FILE:
MSMg01no109_p19.b1 PHD_FILE: MSMg01no109_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:24 2005
         (551 letters)



>mm_chr18_31117710_31118666
          Length = 957

 Score =  994 bits (514), Expect = 0.0
 Identities = 544/557 (97%), Gaps = 6/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcctttgtaactttttagtctgccgcatatagcatggctttgccattctcacagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcctttgtaactttttagtctgccgcatatagcatggctttgccattctcacagtga 260

                                                                       
Query: 61  ggcagagtccttgttatggccatgcctgtgtcaacaatccatgctcactcaggatttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagagtccttgttatggccatgcctgtgtcaacaatccatgctcactcaggatttcat 320

                                                                       
Query: 121 ttgctctttataccttcatgcaggggctgccttggctctgtaagtgctttagatacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctctttataccttcatgcaggggctgccttggctctgtaagtgctttagatacatta 380

                                                                       
Query: 181 ttcataagaataataatatttcctttgtcttttgaaatactacatccattataaccagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcataagaataataatatttcctttgtcttttgaaatactacatccattataaccagtt 440

                                                                       
Query: 241 gatgcttaccataaggaggctagtggaattcactatttatatttttttataatgaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgcttaccataaggaggctagtggaattcactatttatatttttttataatgaaggaa 500

                                                                       
Query: 301 acaaagcttagaagaatataattttttgtgaacaaaatttctattattaatcttaatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaagcttagaagaatataattttttgtgaacaaaatttctattattaatcttaatttt 560

                                                                       
Query: 361 ttcaagtattttctctttcccaattctcacactcccatttttttaa-gtgagataacatc 419
           ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 561 ttcaagtattttctctttcccaattctcacattcctatttttttaaagtgagataacatc 620

                                                                       
Query: 420 ataaaagagacatttgtgctagtctgcatgtctaactctgttgaactttgactc-----t 474
            |||||||||  ||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 621 gtaaaagagatgtttgtgctagtctgcatgtctaactctgttgaactttgactcatttct 680

                                                                       
Query: 475 ttagccagaggagaaaatgtgaatgatcagagatgttgtttcaggacttttcctgngatg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ttagccagaggagaaaatgtgaatgatcagagatgttgtttcaggacttttcctgggatg 740

                            
Query: 535 gagtttgaacatgctag 551
           || ||||||||||||||
Sbjct: 741 gattttgaacatgctag 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 957
Length adjustment: 10
Effective length of query: 541
Effective length of database: 947
Effective search space:   512327
Effective search space used:   512327
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)