Query= MSMg01no110_n14.b1 MSMg01no110_n14.b1 CHROMAT_FILE:
MSMg01no110_n14.b1 PHD_FILE: MSMg01no110_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:34 2005
(621 letters)
>mm_chr18_72228570_72229588
Length = 1019
Score = 980 bits (507), Expect = 0.0
Identities = 587/617 (95%), Gaps = 8/617 (1%)
Strand = Plus / Minus
Query: 5 gaattcacaataaaatctcctgctcgacattcataatgaatttcaggtgtaatctctact 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1003 gaattcacaataaaatctcctgctctacattcataatgaatttcaggtgtaatctgtact 944
Query: 65 tttacttaatcatttttaacgttaatcattttcctaaaatactgtaatacccattgctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 943 tttacttaatcatttttaacgttaatcattttcctaaaatactgtaatacctattgctct 884
Query: 125 ttctctctgtgtctctgtgtctatctggttctctctctctgtctccatctttctctctct 184
||||||| |||||||||| ||| |||||| |||||||||||| ||| ||| |||||
Sbjct: 883 ttctctcagtgtctctgtctctgtctggt--tctctctctgtc----tctgtctttctct 830
Query: 185 gtctctctctgctcttattttccatctcattctggcatttccaacccattcatataacaa 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 829 atctctctctgctcttgttttccatctcattctggcatttccaacccattcatacaacaa 770
Query: 245 ccagagtgatcttttaaaattgagaatctgatcacctctctcaaacattttgaatctcat 304
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 769 ccagagtgatctttttaaattgagaatctgatcacctatctcaaacattttgaatctcat 710
Query: 305 tccctttcataagaaaaaaaaaaatactgcccaaacctacatgtcttcagggatctgtga 364
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttcctttcataag--aaaaaaaaatactgcccaaacctacatgtcttcagggatctgtga 652
Query: 365 tctattttgtacttttccaagctaatactgaccattcatttcttagtccttctctcttgt 424
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctattttgtgcttttccaagttaatactgaccattcatttcttagtccttctctcttgt 592
Query: 425 gctggccacttccctgtacttcagatataccaaactattttatatttcaaggtgtttgtc 484
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 591 gctggccacttccctgtacttcagatataccaaactattttgtatttcaaggtgtttgtc 532
Query: 485 ttgtaaggatatctttctacatatattaacatcatattttcaatctttcccactttgtga 544
||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 531 ttgtaaggatatctttccacatatattagcatcatattttcaatctttctcactttgtga 472
Query: 545 gatctttggagggtacctgaagggaagtctaaaatctctattatacagtcttttgtatgc 604
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 471 gatgtttggagggtacctgaagggaagtctaaaatctctattacacagtcttttgtatgc 412
Query: 605 tatcatagctctcctca 621
|||||||||||||||||
Sbjct: 411 tatcatagctctcctca 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1019
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1009
Effective search space: 616499
Effective search space used: 616499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_n14.g1 MSMg01no110_n14.g1 CHROMAT_FILE:
MSMg01no110_n14.g1 PHD_FILE: MSMg01no110_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:34 2005
(616 letters)
>mm_chr18_72164552_72165568
Length = 1017
Score = 1079 bits (558), Expect = 0.0
Identities = 602/622 (96%), Gaps = 11/622 (1%)
Strand = Plus / Plus
Query: 1 aggccttattcaaatatttgataaatccagaatatttccactgggtaacatgtttttttt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccttattcaaatatttgataaagccagaatatttccactgggtaacatgtttttttt 260
Query: 61 tt----ggtagatatttcttaccaaaagcatttaaacaacaacttgtgacttaaaggatg 116
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttggtagatatttcttaccaaaagcatttaaacaacaacttgtgacttaaaggatg 320
Query: 117 cggaatgaaaaggtaataaatatcaaggcacacatgacaaacaaacccaggaaaataggt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggaatgaaaaggtaataaatatcaaggcacacatgacaaacaaacccaggaaaataggt 380
Query: 177 gcactgtggtaccacagtagtttcaggattgctccaacatcaatgaatttttcgtcccac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactgtggtaccacagtagtttcaggattgctccaacatcaatgaatttttcgtcccac 440
Query: 237 aagggtgtatagcccgagttatttgcttctgcactgatgaagattggattgctcttttct 296
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 aagggtgtatagcctgagttatttgcttctgcattgatgaagattggattgctcttttct 500
Query: 297 ctagctctaactcaatcaatccaaattgatctgtgcctcagtttcctaacacatgaatgg 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagttctaactcaatcaatccaaattgatctgtgcctcagtttcctaacacatgaatgg 560
Query: 357 gaaatgacagcagacggccagtagtaacctcattgaaactaggtaaagaacttcaaaata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgacagcagacggccagtagtaacctcattgaaactaggtaaagaacttcaaaata 620
Query: 417 ctagagttgggtttatacaaaacaatgttatgtgtaagagcatgggcagcctactacttg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagagttgggtttatacaaaacaatgttatgtgtaagagcatgggcagcctactacttg 680
Query: 477 cagaaagacattggaaacaaatactggggataccttaaaactatctgccctaatcaatta 536
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaagacatttgtaacaaatactggggataccttaaaactatctgccctaatcaatta 740
Query: 537 tgcttatgattaataaatactaaatctaccctgttgacaacattctt--ttttttttttt 594
||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 741 tgcttataattaataaatactaaatctaccctgttgacaacattcatggttttttttttt 800
Query: 595 ttttggaaaacgtgtgcccagg 616
||||| |||||||||||
Sbjct: 801 -----gaaaatgtgtgcccagg 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
