Query= MSMg01no111_a02.b1 MSMg01no111_a02.b1 CHROMAT_FILE:
MSMg01no111_a02.b1 PHD_FILE: MSMg01no111_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:46 2005
(650 letters)
>mm_chr18_65751895_65752944
Length = 1050
Score = 1218 bits (630), Expect = 0.0
Identities = 645/650 (99%)
Strand = Plus / Plus
Query: 1 ctatctctttacgtgacaaggagctggagtgactgatggcttgtaagagtgagttataag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatctctctacgtgacaaggagctggagtgactgatggcttgtaagagtgagttataag 260
Query: 61 gcagccacctcacggcagctttgaagatggctgacactccttatctagcacatggtaaag 120
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 261 gcagccacctcacggcagctttgaagatggctgacactccttatgtagcacctggtaaag 320
Query: 121 gtctaccagcagggcatcatggggatcagctctccttggaagatcacactggagtcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctaccagcagggcatcatggggatcagctctccttggaagatcacactggagtcccag 380
Query: 181 ccagccaggaaattgaactgtatacaggactgagctgatgtactgagtgagctgtaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccaggaaattgaactgtatacaggactgagctgatgtactgagtgagctgtaagag 440
Query: 241 gctgggctggtagatttcttacactggtacagggatgaactctgagatagcaatacagtt 300
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gctgggccggtagatttcttacactggtacacggatgaactctgagatagcaatacagtt 500
Query: 301 gagtctgatgaggtagtttacgccatctctacaaaagcctgccttaacacataaatcgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtctgatgaggtagtttacgccatctctacaaaagcctgccttaacacataaatcgta 560
Query: 361 gtttatatcacgttggacacttggccaccattgtatgaaatatgaacctggaacactgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttatatcacgttggacacttggccaccattgtatgaaatatgaacctggaacactgac 620
Query: 421 aatgagttattagtttgttgactgaacctgtcatctggcagtttagctcataatcttgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgagttattagtttgttgactgaacctgtcatctggcagtttagctcataatcttgct 680
Query: 481 ccttgcatggtaggaataggactgctgtggggtcgcagattgctgcaatggggctggact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttgcatggtaggaataggactgctgtggggtcgcagattgctgcaatggggctggact 740
Query: 541 gtggtttggtggaatgggcccaggctgggccgccctggagaaaggagaggaattgtgagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggtttggtggaatgggcccaggctgggccgccctggagaaaggagaggaattgtgagt 800
Query: 601 gtcaggagctgccgagttcagaatgtagctggagcgaattaagcctggct 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcaggagctgccgagttcagaatgtagctggagcgaattaagcctggct 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_a02.g1 MSMg01no111_a02.g1 CHROMAT_FILE:
MSMg01no111_a02.g1 PHD_FILE: MSMg01no111_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:46 2005
(612 letters)
>mm_chr18_65898755_65899766
Length = 1012
Score = 837 bits (433), Expect = 0.0
Identities = 576/651 (88%), Gaps = 50/651 (7%)
Strand = Plus / Minus
Query: 6 aagagggttctttcccttgcctggttcccactccccccttgaggtgggtgttgcgggggg 65
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct: 656 aagagggttctttcccttgcctggttcccactcacaacttgaggtgggagttgcgggggg 597
Query: 66 g-aaatgtgttcttttgagagtaagcacttggctcatgcccagggttcccaccagaacct 124
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaaaatgtgttgttttgagagtaagcacttggctcatgcccagggttcccaccagaacct 537
Query: 125 acatggacacttggccaaagccacaggggtgggggagggatgagcccacccactctccac 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 536 acatggacacttggccaaagccacaggggtgggggagggaggagcccacccactctccac 477
Query: 185 tcttgtgggaaacagggccagctgatgtcgacatgttttatcccatataaggcgatacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcttgtgggaaacagggccagctgatgtcgacatgttttatcccatataaggcgatacct 417
Query: 245 agggacaacttttctgtcactcgggtccccggggcccaagggagcccaaacttccccaac 304
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 416 agggacaaattttctgtcactcgggttcccggggcccaagggagcccaaacttccccaac 357
Query: 305 agagagggaagttttgtccaccattaaacagacacttttgccatggagaaagcatgaatg 364
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 356 --agagggaagttttgtccaccattaaacagacgcttttgccatggagaaagtatgaatg 299
Query: 365 gtcaggc-tgagagccatgacacctaagcttcc-aaaaatctaaggtgggctcccactca 422
||||||| ||||||||||| || ||| |||||| |||||| |||||||||||||||||||
Sbjct: 298 gtcaggcttgagagccatggcatctaggcttccaaaaaat-taaggtgggctcccactca 240
Query: 423 aaggagcaactggctcctgtccttgtccctga---------------------------- 454
|||||||||||||||||||||||| |||||||
Sbjct: 239 aaggagcaactggctcctgtccttatccctgatttctctctctctctctctctctctctc 180
Query: 455 ------------ttgattgattgattggttttt-tttagtttttcgagacagggtttctc 501
|| || || ||| ||||| ||| ||||||| |||||| |||||||
Sbjct: 179 tctctctctttctttctttctt--ttgttttttgttttgtttttcaagacagagtttctc 122
Query: 502 tgtgtagccctggctgtcctggaactcactctgtagaccaggctggccttgaactcagaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgtagccctggctgtcctggaactcactctgtagaccaggctggccttgaactcagaa 62
Query: 562 atccgcctgcctctgccccccaagtgctgagattaaaggcgtgcgccacca 612
||| ||||||||||| ||||||||||||| |||||||||| ||||||||||
Sbjct: 61 atctgcctgcctctg-cccccaagtgctgggattaaaggcatgcgccacca 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
