BAC Information

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BAC

Clone NameMSMg01-111O21
Chromosome18 (Build37)
Map Location 41,500,162 - 41,500,868
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd16, EG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O21.T7 (MSMg01no111_o21.b1)MSMg01-111O21.TJ (MSMg01no111_o21.g1)
ACCAG324475AG324476
length1,1401,120
length of high quality
(start - end)		709 (78 - 786)671 (75 - 745)
definitionCHROMAT_FILE: MSMg01no111_o21.b1 PHD_FILE: MSMg01no111_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:52 2005CHROMAT_FILE: MSMg01no111_o21.g1 PHD_FILE: MSMg01no111_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATTTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CAGAGATGGAGTTGGCCCATTTACTTAGAAAATTACACAGGAGAAATGGC
AAACTGTCGTTTGATAAACACAACAGAATCATTCAGAGTATGGGGTGGGT
TACAAACATTGTGTGGATATAAACCAATCAGGTAACAACACTGGTATATT
TTTCATAAAACATTGCCCAAACTCTAAATACAATATTGTGTAGACTTTGA
TTCTGATAAATCCAACTGAGGTAAAAATACACACGCTCAAAAAAACCCAC
ACTGATCACTTGTGTGTCAGGAGTGGTAGGGAATGAAAAACTAGAATATT
GGCTTGCAACTTGTAAGTGTAATCTCTGACACAAATATATAGCAAATATT
TAGTAAAATTTCTCATATAGTTCTATAAATACATGATATCCTATAAGCAT
ACACATGAAAGGTTGTTTAGATATGTGTTTTGATATGAGATTACTATGGA
CAAATGGGTCTTATGGAAGAGAAGGCATAGTCACCCAGGTCTGGCAGACA
GCTTTTCCCCAGAAGATGTTTAGCTATGCAAAGAAATGATTATAGCAGAA
TAAGAAAAATGTCCTTGATGTAGTCTCCAGTTTGGAAGATTTTATGGGAA
GACCTCTGTTAGATATGCTGTGGAAAGCTATAGATGGCATATTGCATTCT
GGGAGCATATGGACAAAAGCATTGTTTAGCATGGGGAATAATTTTTCTGA
TTTCCTGAAGTCACCAAGTCCATTATTTTGCATTTGTAAAATATACAATA
ACTAAGCAAACTGACTGAGCAGACTTTTCCAGTAGAATGAAGGTCTCTAG
TTACTATTGAACATTCCACTTGGCATGAAAAGTTTTGCGGGTGTGTGGTT
CATGACTTACAAGTCTCAGGGGTGTGCTTTCTTTTTTCATCTGTAATAAT
TTCCAACTACCACCATTTTTAACGAACATTCTATTTCTTCCCTAAAAACA
GAATCCAGGGTCAATGGGGCTTTCATAATACTCCCCCTCAACTTGAATAA
AGCCTTGGGCCCTAACCAGGGGAAGAACTTTGCCCCCCCCTTATCTTCAA
CTGGGCCCCCCTTAAAAAATTTTTGGGCATTCTAAAATTT

NNAATTCACGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTTAATGATCACCTGTCTCCTTTTATTCCAATA
CCATGCCCTTTTTGTTTCTATTGCTCTGTAATACAGCTTAAAATTAGGGA
TGGTGATACCTCTAGAAGTTCTTTTATTGTTTAGGATTGTTTTTAGCTAT
CCTGAGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTGTTTGTT
CTTATGAAGTTGAGCATTGTCCTTTAAAGGTTTGTGAAGAATTGTTTTGA
AATTTTGATGGGAATTGCATTGAATCTGTAGACTGTTTTTGGTAGGATGA
ACATTTTTACTACTGATCTAAGAGATGGGGATCTTTCCATCTTCTTATAT
CTTCCTCAATTTCTTCAGAAACATGAAGCTCTTGTCATACAGGTCTTTCC
TTGCTTGGTTAGAGTTACCCCAAGATATTTTATATTATTCGTGGCTATTG
TGAAGGGTGTTGTTTCCCTGATTTCATTCTCAACCTGTTTATTTTTGTAT
ATAGAAAGACTATTGATTTTTTTGAGTTATTTATTTTAATCCAGACACTT
TACTGAAGATAAGATTATTATCTTAGAGGGTAATAAATATTCTTTGGTAG
AATATTTGGGGTCACTTGTGTGTACTGTCATATCATACAGGACTTCTTCT
TTTCCAATTTGTATCCCCTTGATCTCCTTAAATTGTTTTATTTCTGTAGG
TACAATTTCATGCTCAATATTGAACAGATACTGAGAAAGTGAAGCAACTG
TTGTCCCTGATTTTAGTGTAATTGCTTTTAAGTTTCTTTCCATTTCATTT
GATGTTGCTCTTGGCCTGCTGTATATTGCTTTTATTATCTTTAGGTATGC
ATCTTGCTCCTTGATTTCTCCAAGACTTTTAACTTGAAGGGGCGTTTGGA
TTTTTTGTCAAAGGTTTTTTGATTATCCTATAGGATATGAATCTGTTGAT
TTTTTTTTTCCCCCCCCCTTTGTTTTATTTGGGTAAAATTAACCTTTGGA
GGAAATTTTTTTGTATATTTGGAACCCATCCCCCTATATTCTCTGGTGGA
AGAGAGAGCCTTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o21.b1 MSMg01no111_o21.b1 CHROMAT_FILE:
MSMg01no111_o21.b1 PHD_FILE: MSMg01no111_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:52 2005
         (709 letters)



>mm_chr18_41499962_41501068
          Length = 1107

 Score = 1301 bits (673), Expect = 0.0
 Identities = 700/709 (98%), Gaps = 2/709 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaattacacaggagaaatggcaaactgtcgtttgataaacacaacagaatcattcaga 60
           |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 201 gaaaattacacaggagaaatggcaaactgt-gggtgataaacacaacagaatcattcaga 259

                                                                       
Query: 61  gtatggggtgggttacaaacattgtgtggatataaaccaatcaggtaacaacactggtat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtatggggtgggttaaaaacattgtgtggatataaaccaatcaggtaacaacactggtat 319

                                                                       
Query: 121 atttttcataaaacattgcccaaactctaaatacaatattgtgtagactttgattctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atttttcataaaacattgcccaaactctaaatacaatattgtgtagactttgattctgat 379

                                                                       
Query: 181 aaatccaactgaggtaaaaatacacacgctcaaaaaaacccacactgatcacttgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatccaactgaggtaaaaatacacacgctcaaaaaaacccacactgatcacttgtgtgt 439

                                                                       
Query: 241 caggagtggtagggaatgaaaaactagaatattggcttgcaacttgtaagtgtaatctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caggagtggtagggaatgaaaaactagaatattggcttgcaacttgtaagtgtaatctct 499

                                                                       
Query: 301 gacacaaatatatagcaaatatttagtaaaatttctcatatagttctataaatacatgat 360
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 500 gacacaaatatatagcaaatatttagt-aaatttctcatatagttctgtaaatacatgat 558

                                                                       
Query: 361 atcctataagcatacacatgaaaggttgtttagatatgtgttttgatatgagattactat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atcctataagcatacacatgaaaggttgtttagatatgtgttttgatatgagattactat 618

                                                                       
Query: 421 ggacaaatgggtcttatggaagagaaggcatagtcacccaggtctggcagacagcttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggacaaatgggtcttatggaagagaaggcatagtcacccaggtctggcagacagcttttc 678

                                                                       
Query: 481 cccagaagatgtttagctatgcaaagaaatgattatagcagaataagaaaaatgtccttg 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cccaaaagatgtttagctatgcaaagaaatgattatagcagaataagaaaaatgtccttg 738

                                                                       
Query: 541 atgtagtctccagtttggaagattttatgggaagacctctgttagatatgctgtggaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgtagtctccagtttggaagattttatgggaagacctctgttagatatgctgtggaaag 798

                                                                       
Query: 601 ctatagatggcatattgcattctgggagcatatggacaaaagcattgtttagcatgggga 660
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 799 ctatagatggcatattgcattctgggagcatatagacaaaagcattgtttagcatgggga 858

                                                            
Query: 661 ataatttttctgatttcctgaagtcaccaagtccattattttgcatttg 709
           ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 859 ataatttttctgatttcctgaagtcaccaagtccattattttgtatttg 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1107
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1097
Effective search space:   766803
Effective search space used:   766803
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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