Query= MSMg01no112_d22.b1 MSMg01no112_d22.b1 CHROMAT_FILE:
MSMg01no112_d22.b1 PHD_FILE: MSMg01no112_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:21 2005
(348 letters)
>mm_chr18_35854996_35855744
Length = 749
Score = 590 bits (305), Expect = e-173
Identities = 338/349 (96%), Gaps = 2/349 (0%)
Strand = Plus / Minus
Query: 1 tctagtatggaattgagcattataatacgtagcaacagaccaaacccaacagttctcgct 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 436 tctagtatggaattgagcattataatatgtagcaacagaccaaacccaacagttcttgct 377
Query: 61 ctc-tttttttaacatataaatgaaaaagctttttctcttataataataaacagtatata 119
||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 ctctttttttttatatataaatgaaaaggctttttctcttataataataaacagtatata 317
Query: 120 gtaggaacaattatgaaattattatgaaaattattaggtaaagttacattaaaaaatcta 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 316 gtaggaacaattatgaaattattatgaaaattattaggtagagttacattaaaaaatcta 257
Query: 180 gtctggccgggcttgtggcgcacgcctttaatcccagcactcgggaggcagaggcaggtg 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 256 gtctggccgggcttgtggcgcacgcctttaatcccagcgctcgggaggcagaggcaggtg 197
Query: 240 gatttctgagtttgaggtcagcctggtctacaaagtgagttccaggacagccagggctac 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gatttctgagtttgagcccagcctggtctacaaagtgagttccaggacagccagggctac 137
Query: 300 acagagaaaccctgtctcgg-aaaaaaaaaaatctagtctggggctgaa 347
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 136 acagagaaaccctgtctcggaaaaaaaaaaaatctagtctggggctgaa 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 749
Length adjustment: 9
Effective length of query: 339
Effective length of database: 740
Effective search space: 250860
Effective search space used: 250860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_d22.g1 MSMg01no112_d22.g1 CHROMAT_FILE:
MSMg01no112_d22.g1 PHD_FILE: MSMg01no112_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:21 2005
(611 letters)
>mm_chr18_35699268_35700278
Length = 1011
Score = 1158 bits (599), Expect = 0.0
Identities = 608/611 (99%)
Strand = Plus / Plus
Query: 1 cgtaggtgtttcccagtacccggtggtacctccaatccctctggctgcacctgaccatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtaggtgtttcccagtacccggtggtacctccaatccctctggctgcacctgaccatcc 260
Query: 61 cagttcttccgggactggttgtcccctgaacttaggacataactttctgcaaacccctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttcttccgggactggttgtcccctgaacttaggacataactttctgcaaacccctga 320
Query: 121 aagccagttcaagaagaaagagtccctgcagccatcaattttgatctatgttagaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccagttcaagaagaaagagtccctgcagccatcaattttgatctatgttagaaaaga 380
Query: 181 tgcttttttaaaaggccctctgttcaccaccacctgtttcccgattgggggctcaggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttttttaaaaggccctctgttcaccaccacctgtttcccgattgggggctcaggctc 440
Query: 241 tgctctctgagattccagcctgacagcatcttcatttgcagtcactgagcagaaactacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctctctgagattccagcctgacagcatcttcatttgcagtcactgagcagaaactacc 500
Query: 301 tcaaaagcctccagatgctaaactagcaacctgcttttcttactgcgccctgcgcttgcc 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tcaaaagcctccagatgctaaactagcaacctgcttttcttactgtgccctgcgcttgcc 560
Query: 361 agcaacttcagttgctcgcagctgaggctacagcgccatctgctgctcatccgaggaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaacttcagttgctcgcagctgaggctacagcgccatctgctgctcatccgaggaaac 620
Query: 421 aggctgaggctgcaaaaaggcctgggagcctgggaggagggggaggctggctgggcggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggctgaggctgcaaaaaggcctgggagcctgggaggagggggaggctggctgggcggct 680
Query: 481 ggctgtgggtctcaagagaaccgccgtctttgttctggacaaatccagtactggccctct 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctgtgggtctcaagagaaccgccttctttgttctggacaaatccagtactggccctct 740
Query: 541 gggacaaggcaaatgttttgatcattgtcgccagtccttcatctgaggcaaggctggatg 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 gggacaaggcaaatgttttgatcattgtcgtcagtccttcatctgaggcaaggctggatg 800
Query: 601 cttatctccta 611
|||||||||||
Sbjct: 801 cttatctccta 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
