BAC Information

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BAC

Clone NameMSMg01-112M23
Chromosome18 (Build37)
Map Location 65,649,591 - 65,649,803
singlet/doubletsinglet
Overlap genenone
Upstream geneNars, Atp8b1, LOC629480, Nedd4l, Alpk2, LOC667816, Malt1
Downstream geneLOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112M23.T7 (MSMg01no112_m23.b1)MSMg01-112M23.TJ (MSMg01no112_m23.g1)
ACCAG325123AG325124
length734823
length of high quality
(start - end)
---216 (80 - 295)
definitionCHROMAT_FILE: MSMg01no112_m23.b1 PHD_FILE: MSMg01no112_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:04 2005CHROMAT_FILE: MSMg01no112_m23.g1 PHD_FILE: MSMg01no112_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAATTGCGNCCGCTAAACAACTCACTATTTTCCAAAAANCCGCGNAA
NTCCANCNCTTTTTCCAAAATTCAAANCCAGCCNGAACCCCAAAACAACA
NCNAAACNTANNCCAAAAACAAACCCAAACAAAANGCAAAGCAACTGCGG
GCGGGCAAAAATTTTNANCCAANNANCCNNACAGGCCGTTGGCGGGGGAC
AACCCCAAACAAACCCNCNNCAAAAAAAAAATTCAAACTAAAAAATAATT
ATTTTTGGGGCGGGGGCGAAACCNAAANNAAANTCACAAAAANNCNAAAA
CACAAAAACCCTTTTTTTAAAAAAAACNTGTTTGTGGGGGGGGGAAACTA
GATGAGGGGGAAGAAGGGGGGTGAGAGAGGAAGGGTGTTATTATTTGTTT
TTGTATTGTTGGGGGGGGTTGGGGATGGNNNCNNCNCNNNNNCNNNNNNN
NNNNNNNNNNAANTTTTTTTTGTTGGAGAATAGGTAAGCTCATGAGGCAG
GANNNNNNNNNNNNNNNNNNCCNNNNNAANANNNNNNNNNNNNNNNNNNN
NNNNATNCNNNNCNNNNATTTAATAATTTCCCATCCCTTTTCACCCCNCC
TTTAANNCCCCCTCTCCTATTCNTTATCNCCCCCCAATAAATTTACAAAA
AATATTAAACCATTTTTTTTTTCCCCCCCCCTTTTTTCTTTTCCCCCAAC
CCTTTTTTTTTCCCCTTTAATTCTATTTTTTGTG
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAGGCTTGGTGACAGGTA
ACTTAACTGTTGAACAGAATCCTCAGCCACCCTGAGTGCAGTCAGGACTT
TCTGGTGCAGTCTCTTGCGCCCCCTGCTGGCACACGTGAAGTAACTGTGG
CCAATGGAAAAGAAGGAATCCCAAAACATTCACAGAAACACGATCGAATG
AGACATTAACAGTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC
GCGCTCCCTTCTCATTTTTCATTTTTCTTTCTCCCCCCATACTTTTTTCC
TCCCCCCTCCTTTTTTTTTTTTCCCCCCCCTCCTTTTTTCCCTTTTCCCC
TCTTCACTCTCAACCTCGTTATTCTCCTCCCCCCTTTTCCTTATTTTTTT
CCCACTTTTTCCTTTTTCCCCTCTTTTCCATTTCCCCTCCCTATTATTTT
CCTCCCCTGTTTCACTTCCCTTTACCTTTTTCTCACCTTCTTATTCTTCC
TTACCCCCTATTTTCTTCCCTCTTTACCCCCTCTTTTATTCCCCCTCTTT
TTCTTTTTTTCCCCTTTTTTTTCCTCCCTTTTCCCTTTTCCCTTATTTTT
TTTTCCCCCCTTATTTCTCCTTCCTTTCCCTTCCCCCCCCCCCTTTTTTT
CCCCCTCGATCCCCTCTTTTTTTCACTCTTTTCTTCTCTTATTCTTCCCC
CTTACCTCCCTCTATCTCCTCCTCTTCTTCTATCTCTCCCCTTCCCACTT
CTTTTCAACTATCCCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_m23.g1 MSMg01no112_m23.g1 CHROMAT_FILE:
MSMg01no112_m23.g1 PHD_FILE: MSMg01no112_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:04 2005
         (216 letters)



>mm_chr18_65649391_65650003
          Length = 613

 Score =  364 bits (188), Expect = e-105
 Identities = 208/218 (95%), Gaps = 7/218 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccaggcttggtgacaggtaacttaactgttgaacagaatcctcagccaccctgagtgc 60
           ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||
Sbjct: 201 caccaggcttggtgacaggtaact-----gttgaacagaatcctcagccaccctgagtgc 255

                                                                       
Query: 61  agtcaggactttctggtgcagtctcttgcgccccctgctggcacacgtgaagtaactgtg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 agtcaggactttctggtgcagtctcttgcgccccctgctggcacacatgaagtaactgtg 315

                                                                       
Query: 121 gccaatggaaaagaaggaatcccaaaacattcacagaaacacgatcgaatgaga--catt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||
Sbjct: 316 gccaatggaaaagaaggaatcccaaaacattcacagaaacacgatcgaaagagagacatt 375

                                                 
Query: 179 aacagtggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 216
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 376 aacagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 613
Length adjustment: 9
Effective length of query: 207
Effective length of database: 604
Effective search space:   125028
Effective search space used:   125028
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)