Query= MSMg01no112_p12.b1 MSMg01no112_p12.b1 CHROMAT_FILE:
MSMg01no112_p12.b1 PHD_FILE: MSMg01no112_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:16 2005
(490 letters)
>mm_chr18_32994715_32995605
Length = 891
Score = 822 bits (425), Expect = 0.0
Identities = 473/489 (96%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctgccctctctgcagccactgacagagcctgagcagcaactctgctagattac 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 204 ggaattcctgccctctctgcagccactgacggagcctgagcagcaactctgctggattac 263
Query: 64 tca-aaaagtataacttttctttgttttctcttttttcccagatgctctccaaagcttag 122
||| |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 264 tcagaaaa-tataacctttctttgttttctcttttttcccagacgctcttcaaagcttag 322
Query: 123 gcatgctttctcagacactgcttcttcatgctttctcagaagcccttactcttgccccct 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 gcatgctttctcagacactgcttcttcatgctttctcagaagcccttactcttgccccgt 382
Query: 183 gtctgctcataaaggcatggttctctctcatccatattctccctcagggcagttccaaca 242
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 gtctgctcataaaggcacagttctctctcatccatactctccctcagggcagttccaaca 442
Query: 243 attacgtctttgcctatcttgtttataaattctgttaaaattgtcctcaagcttccttct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attacgtctttgcctatcttgtttataaattctgttaaaattgtcctcaagcttccttct 502
Query: 303 gaatccattcttaatttctttgattgaataaactaagaaccttgaagaggggtacctcaa 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 gaatccattcttaatttctttgattgaataaactaagaaccttgaagaggggcacctcaa 562
Query: 363 ttctctcagtaataatgcaaaaatttaaaaagtaaggaatctgtattctaatctttattg 422
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 ttctctcagtaataatgcaaaaatttaaaaagtaagccatctgtattctaatctttattg 622
Query: 423 tgtaaacaaactcagtaaaataaaaa-tagaaaaatattggccgtatgaatgcggtggtg 481
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 623 tgtaaacaaactcagtaaaataaaaaatagaaaaatattggccgtatgaatgtggtggtg 682
Query: 482 gtgatggtg 490
|||||||||
Sbjct: 683 gtgatggtg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_p12.g1 MSMg01no112_p12.g1 CHROMAT_FILE:
MSMg01no112_p12.g1 PHD_FILE: MSMg01no112_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:16 2005
(622 letters)
>mm_chr18_33115971_33116992
Length = 1022
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%)
Strand = Plus / Minus
Query: 1 ctccccgcttaagtactaaggtagagaaaaacaatccctaagtctggctactagttacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctccccgcttaagtactaaggtagagaaaaacaatccctaagtctggctactagttacca 762
Query: 61 ggattacttaacgtgtaagaagtctcctttatgttactcatctttatcaatatgcagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ggattacttaacgtgtaagaagtctcctttatgttactcatctttatcaatatgcagaga 702
Query: 121 cccacagaactgcttaataaatcctttttaaggtgttttccaaggctctcattttcattt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 701 cccacagaactgcttaataaatcctttttaaggtcttttccaaggctctcattttcattt 642
Query: 181 ctgaattaaaggcaacttgtgtctattctgggtctatctatttaacttgccagtgaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctgaattaaaggcaacttgtgtctattctgggtctatctatttaacttgccagtgaagaa 582
Query: 241 tgcattgttctgaataagaaaaattaatgaatttttaataaagtgttagtgcaaataaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgcattgttctgaataagaaaaattaatgaatttttaataaagtgttagtgcaaataaga 522
Query: 301 tctcaaagcaacaaaaagattaatattttccaattttaacattcctctgagaagtcaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tctcaaagcaacaaaaagattaatattttccaattttaacattcctctgagaagtcaagg 462
Query: 361 aagctgtaaaagaaatcatatataaagaaccacctacaacagttattttaaactacccca 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 aagctgtaaaaaaaatcatatataaagaaccacctacaacagttattttaaactgcccca 402
Query: 421 accatcctttctttgttatctgcaggaatggaaagccttaaggttatactgcatgttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 accatcctttctttgttatctgcaggaatggaaagccttaaggttatactgcatgttctt 342
Query: 481 ttccatttgcaaaatacaaagatcaggggtcacccactcggaaatactgaataatgaatg 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttccatttgtaaaatacaaagatcaggggtcacccactcggaaatactgaataatgaatg 282
Query: 541 ccctccactgggagaacaggagctgagatcctccgcgagcctgcgctcccagacagctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccctccactgggagaacaggagctgagatcctccgcgagcctgcgctcccagacagctca 222
Query: 601 tttggaagctgcaagagcaga 621
|||||||||||||||||||||
Sbjct: 221 tttggaagctgcaagagcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
