BAC Information

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BAC

Clone NameMSMg01-113J01
Chromosome18 (Build37)
Map Location 61,646,119 - 61,742,914
singlet/doubletdoublet
Overlap gene4933429F08Rik, Csnk1a1
Upstream gene2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675
Downstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113J01.T7 (MSMg01no113_j01.b1)MSMg01-113J01.TJ (MSMg01no113_j01.g1)
ACCAG325671AG325672
length700699
length of high quality
(start - end)
602 (42 - 643)514 (71 - 584)
definitionCHROMAT_FILE: MSMg01no113_j01.b1 PHD_FILE: MSMg01no113_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:02 2005CHROMAT_FILE: MSMg01no113_j01.g1 PHD_FILE: MSMg01no113_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,742,317 - 61,742,914)(61,646,119 - 61,646,632)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGACACGCCCGCTTAAGTGAGCATGCACCTGAGCATCCGGAGAAGGA
CCTTCTACATGGTTTGTCTTCAAGACAGTCTTACTACGTAGCCCTGGCTG
TTCTCAAATTCAGAGATCCAAACTCCTGTCTCCTGAGAGCTGAGATTAAA
GATATGTACCACAACCCTCAGCCATTTTCCATAATTTTTGAGCAGAGAGA
AATAATATGGTATTACCATTATTGGAAGATACCACGACATCAAAAGCTAT
AGTAGCAGAAATAGCCTATAGTTCTATGTACACCCTATTACCTAAAAGTT
TCAAGTCACCATTAACCTACATAATGTGAGAGGCAGAAGGTCTAAGACTA
GATTTCTCATGCTTATTTCAAGCCACCCTTAGGGTAGAAGCATTTTCTTA
ACTTTACCCTTTGGAATCAGGTCTTCCACTGTGGACCTGGAACTCATTGA
CTGGGCTTACTCAGGCTATCCAACAAGGCCCATGGCTTTGCTTAGAGTAC
ACTTCATTACAGCCTGCTGGCTGCTGTTTTGAGACAGGACCTTGCTCACA
AGAGATGGACTTTCTAGGATTCAGGGCATGTGCTGCACACGATGCCCAGN
CCACTCTGGCCCCTCCCTCCCTTTCTTCCTTCAGTTTTCTTTCCCCAAGA

ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGAGCATTGGAAGAGGACAGTGCACTAT
TACTTCCCAGGGGAACCACCCTTGGTGTCTGGAGACTTCCACTTGCTTTG
CGTTTTGAAAGTGCTCACGCAGCCCTGGGGCATTTCAGTGTGGCCGAGTA
AGGGGTCAGGAACAGGGGCATCAGAAGAAAGGCTGAAGGTGCTAGGGTTA
ATTTGAAGCACAGTGCAGGGTCCTGGGCCTGTGATGCTTCCAGGGGAAGC
TGAAGAGGGCTTGGTGCCCAGAATCAAATCTGCATTGAGCCCTATGCCTA
GAAGACACGCTGTCTAGGGGTGCTGTGTTCTGTTCTGTCTCAACACCTCA
GCAACCCCATGACTAACCCGCAAAGAGGAAGGTGAGGTTTTTTAAAGAGA
TTAAGTAACTTGTTTCAAAGAGGTTACCCAGCCCACAACTGTGGGTCAGG
ATTTGAACACAAGCATCTTGCAGAGAAAAAAAAATCTGGCTCCTATACTA
TTTCCCCTAATCAGCTCCCTTGGCTCTGAAAACCAACCTAACCCCAAATG
CAAGGATTTGAAGGCAGCTCCAGTCCGGTCTCCAGGGCGGGGCCCAGTAC
AAAGTCTCTTGTACCAATTGCAGGACCCGACCTTGTATCCTATTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_j01.b1 MSMg01no113_j01.b1 CHROMAT_FILE:
MSMg01no113_j01.b1 PHD_FILE: MSMg01no113_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:02 2005
         (602 letters)



>mm_chr18_61741936_61742937
          Length = 1002

 Score = 1102 bits (570), Expect = 0.0
 Identities = 591/598 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgacacgcccgcttaagtgagcatgcacctgagcatccggagaaggaccttc 64
           |||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 979 gaattcactgacacgaaagcttaagtgagcatgcacctgagcacccggagaaggaccttc 920

                                                                       
Query: 65  tacatggtttgtcttcaagacagtcttactacgtagccctggctgttctcaaattcagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tacatggtttgtcttcaagacagtcttactacgtagccctggctgttctcaaattcagag 860

                                                                       
Query: 125 atccaaactcctgtctcctgagagctgagattaaagatatgtaccacaaccctcagccat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 859 atccaaactcctgtctcctgagagctgagattaaagatatgtaccacaaccctccgccat 800

                                                                       
Query: 185 tttccataatttttgagcagagagaaataatatggtattaccattattggaagataccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tttccataatttttgagcagagagaaataatatggtattaccattattggaagataccac 740

                                                                       
Query: 245 gacatcaaaagctatagtagcagaaatagcctatagttctatgtacaccctattacctaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gacatcaaaagctatagtagcagaaatagcctatagttctatgtacaccctattacctaa 680

                                                                       
Query: 305 aagtttcaagtcaccattaacctacataatgtgagaggcagaaggtctaagactagattt 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagtttcaagccaccattaacctacataatgtgagaggcagaaggtctaagactagattt 620

                                                                       
Query: 365 ctcatgcttatttcaagccacccttagggtagaagcattttcttaactttaccctttgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcatgcttatttcaagccacccttagggtagaagcattttcttaactttaccctttgga 560

                                                                       
Query: 425 atcaggtcttccactgtggacctggaactcattgactgggcttactcaggctatccaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atcaggtcttccactgtggacctggaactcattgactgggcttactcaggctatccaaca 500

                                                                       
Query: 485 aggcccatggctttgcttagagtacacttcattacagcctgctggctgctgttttgagac 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 aggcccatggctttgcttagagtacacttcatcacagcctgctggctgctgttttgagac 440

                                                                     
Query: 545 aggaccttgctcacaagagatggactttctaggattcagggcatgtgctgcacacgat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggaccttgctcacaagagatggactttctaggattcagggcatgtgctgcacacgat 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_j01.g1 MSMg01no113_j01.g1 CHROMAT_FILE:
MSMg01no113_j01.g1 PHD_FILE: MSMg01no113_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:02 2005
         (514 letters)



>mm_chr18_61645919_61646832
          Length = 914

 Score =  971 bits (502), Expect = 0.0
 Identities = 511/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagcattggaagaggacagtgcactattacttcccaggggaaccacccttggtgtct 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagcattggaagaggacagtgcacgattacttcccaggggaaccacccttggtgtct 260

                                                                       
Query: 61  ggagacttccacttgctttgcgttttgaaagtgctcacgcagccctggggcatttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagacttccacttgctttgcgttttgaaagtgctcacgcagccctggggcatttcagtg 320

                                                                       
Query: 121 tggccgagtaaggggtcaggaacaggggcatcagaagaaaggctgaaggtgctagggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccgagtaaggggtcaggaacaggggcatcagaagaaaggctgaaggtgctagggtta 380

                                                                       
Query: 181 atttgaagcacagtgcagggtcctgggcctgtgatgcttccaggggaagctgaagagggc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 atttgaagcacagtgcagggtcctgggcctgtgacgcttccaggggaagctgaagagggc 440

                                                                       
Query: 241 ttggtgcccagaatcaaatctgcattgagccctatgcctagaagacacgctgtctagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtgcccagaatcaaatctgcattgagccctatgcctagaagacacgctgtctagggg 500

                                                                       
Query: 301 tgctgtgttctgttctgtctcaacacctcagcaaccccatgactaacccgcaaagaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgctgtgttctgttctgtctcaacacctcagcaaccccatgactagcccgcaaagaggaa 560

                                                                       
Query: 361 ggtgaggttttttaaagagattaagtaacttgtttcaaagaggttacccagcccacaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgaggttttttaaagagattaagtaacttgtttcaaagaggttacccagcccacaact 620

                                                                       
Query: 421 gtgggtcaggatttgaacacaagcatcttgcagagaaaaaaaaatctggctcctatacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggtcaggatttgaacacaagcatcttgcagagaaaaaaaaatctggctcctatacta 680

                                             
Query: 481 tttcccctaatcagctcccttggctctgaaaacc 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcccctaatcagctcccttggctctgaaaacc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)