BAC Information

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BAC

Clone NameMSMg01-114D17
Chromosome18 (Build37)
Map Location 83,807,068 - 83,807,378
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D17.T7 (MSMg01no114_d17.b1)MSMg01-114D17.TJ (MSMg01no114_d17.g1)
ACCAG326164AG326165
length744747
length of high quality
(start - end)
315 (46 - 360)585 (75 - 659)
definitionCHROMAT_FILE: MSMg01no114_d17.b1 PHD_FILE: MSMg01no114_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:52 2005CHROMAT_FILE: MSMg01no114_d17.g1 PHD_FILE: MSMg01no114_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTGATCATTTTTAACTAGATGCAATCTCTCTCTCTTTCTCTTTC
CCTTTCTCTTACAGACATGTGAAAAATAGCCTAATAAGGATCTTCGTGGT
AAAATCAGATGGAAAACGGGGAGGCAGAGTCGCGTCTCCAGCAGCTCATT
CGACGCGGCGTCTCCTCCGAGTTGTACAATAATCATCAGTGCTGGCCCGG
TGCCGCTGGATTATTTTGTATATTCATGAAGGCCCTCATCAGCCGTCAGG
AGACTGTGCAGTAATCCTTGGATGATATAAGGCCAATCAGAGCGATAATG
AGGAAGGTAATATCTTCTAAGAGGCCTGCCGTGGGTTTTCATCAGGCCCA
GCAGTAACTCTCCAACTATTTGCTTTACAAATGCAGTCTTTGATCTCTGA
TTTGGGGAGCGGAGGGGGAGACAGACCTGCCGGTGCATTGTCCAGCTTGC
GAGGATAACAAGTAGGCGCACAGGACGGCGGTAGGCAAGAACACAGTCTT
TAAGGATCAGTCGGCTCTCGCTAACCAAAACTCCACCGTCCCTTATCTAC
TGTGCTCTCGTACCTGCTCCCTTACCATGTTCATTGCCCAGAGGCTTCTC
CTCCCGCTTTCCATCTATTTATATACGCGGACCCATAACAGTCCTCTTGC
GAACAGAAGTTAATGGGCCTTCCTAAACCCCTGGCCCCGCTCTT
TATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTCCAGGTGGTTCCTGTTAGACCT
TTTGTGTTTGCATTCCTCTGTTTTGTGTAAGAATCAAGTAACCTCTTTGT
ACCTTGCAGATATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGT
TTGATGCTCGATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTG
TGTGCATGTCTGTCATTCCATTCCAACTCTTTGCCCACCTGTGACTAGAG
ACCCGTTCCAAGCAGACAAAGGGGCCCAGAGGGTCTGCGTCAACAGAGAT
GATGGCAAGGATGTGGGGAAAGAGGAACACTCCTCCACTGCTGGTGGGAT
TGCAAGCTGGTACAACCACTCTGGAAATCAGTTTAGTGGTTCCTCCGAAA
ACTGGACATAGCATTACTGGAGGACCCACCAATACCATTCCTGAGCAAAT
ACCCAGAAGATGCTTCAACATGTAATAAGGACACATGTTCCACTATGTTC
ATAGCAGCCTTATATATAATACCAAGAAGCTGGAAAGAACCCAGATGTCC
CTTAACAAAGGAATGGATACAGAAAATGTGGTATATTTATACAATGGACT
ACTACTTAGCTATCACAAACAATAAATTCATGAAATTCTCAGGGAGTAAT
GTTTTTATAGTATGGTTTTAGTTTGCATTTCCTTAATGCAACACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d17.b1 MSMg01no114_d17.b1 CHROMAT_FILE:
MSMg01no114_d17.b1 PHD_FILE: MSMg01no114_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:52 2005
         (315 letters)



>mm_chr18_83806804_83807518
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgatcatttttaactagatgcaatctctctctctttctctttccctttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattccctgatcatttttaactagatgcaatctctctctctttctctttccctttctct 516

                                                                       
Query: 65  tacagacatgtgaaaaatagcctaataaggatcttcgtggtaaaatcagatggaaaacgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacagacatgtgaaaaatagcctaataaggatcttcgtggtaaaatcagatggaaaacgg 456

                                                                       
Query: 125 ggaggcagagtcgcgtctccagcagctcattcgacgcggcgtctcctccgagttgtacaa 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 455 ggaggcagagtcgcgtctccagcagctcattcgacgcggcggctcctccgagttgtacaa 396

                                                                       
Query: 185 taatcatcagtgctggcccggtgccgctggattattttgtatattcatgaaggccctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taatcatcagtgctggcccggtgccgctggattattttgtatattcatgaaggccctcat 336

                                                                       
Query: 245 cagccgtcaggagactgtgcagtaatccttggatgatataaggccaatcagagcgataat 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 335 cagccgtcaggagactgtgcagtaatccttggatgaaataaggccaatcagagcgataat 276

                      
Query: 305 gaggaaggtaa 315
           |||||||||||
Sbjct: 275 gaggaaggtaa 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)