BAC Information

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BAC

Clone NameMSMg01-114D23
Chromosome18 (Build37)
Map Location 48,126,198 - 48,126,480
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D23.T7 (MSMg01no114_d23.b1)MSMg01-114D23.TJ (MSMg01no114_d23.g1)
ACCAG326176AG326177
length7341,014
length of high quality
(start - end)
283 (68 - 350)---
definitionCHROMAT_FILE: MSMg01no114_d23.b1 PHD_FILE: MSMg01no114_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005CHROMAT_FILE: MSMg01no114_d23.g1 PHD_FILE: MSMg01no114_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTCACAATCT
TTCTCTCGACCACATTTGGTGCTCATGAGATCCAGCTGTAGAAGGAACAT
GAAAATACAGAATAAGGACAGAATCCTTAATATTCCCAGAAACTCTTTTT
AAGACTTGGTGAAAACAAAATCCTTTCTTCATAGAAAAATTCAAGCCAAA
AGATATTTTGAAGTTGTTAAAATAACTACATAAGCAGTAAACATCAACAT
GGTTTCCCCATAATGGAAAAATATGCTGAGCAGGTTAGATACAATTTTGT
ATTAAGGACTAGGTAATTTGGGGTGAGTGACTAGGGCCTATTCAGCAGGG
AAAGATGTAAAGAGAAAGGGACCTATAGGCTTCAGCATCAATTCTGACTG
TGTTGAGGTGTCCTGGAAGAGGAGGGTGACAGTCCTAGCTGCCAGCTGGT
CCTACAGGTTAGTGACCACATAAAAGATGTCCTTATGTCACTCTTATGGC
CCTCTTATATGGGTGATATCATTTTCTGTATGAACAGAGGGAGGAAAACA
AATGGTCTTCAATGGATTTAGAGAAAGGAGAAAGAGAATTTAAACCTGGT
TTGACCTCCAGCTTGTTAAAATGTTTCACAGACCATTAATTACACCCATT
TTGTGAGTACCATTTTAGAGATTTCACGAATTGGTTTTCCTAATTACCTT
AGGCCTTACCGACTTTGGAAGACAGTATTTAGTN
TTTACGAGTCGAAGTAAGGATTGTTGGAATGTCAGTTTTATTGCCTAAAT
GGTGCCAGGGCATAAGGGGTCTTTTTCCGAACTAACGGGATACATATACT
CTTTATTCGGGTACCGTTACCTAAAACACCGCGGTACGCGTATTCCTAGT
CGCGCGCACAAAACGGATAAACCGCCTTACCCTTTTCCCCCCCAACTTTT
AACATAAATGAGAAAAAGAGAAGGAGAAAAATCAATATTCCCATACGCGC
GTGCTTTCACCCCCTTTCCTAACGTTTTCCCCATTTTTCCCTTTACCACT
TTTTACTGACTTAAGCTGGCGCGGAAGAAGAAACTTTACTTGTGGATTAT
GCCTTTATCCTATCTACTCCCTTTTATACCACACCTTCGCACGAGTAAGT
GGAGAGGTGTCACCAATCTAAAAACGCCCGCCGCCTATTATAATCCGCCG
AATTGGTGGTGGATAATCAATAACATAGGACTAGACACATTGCGACAAAA
CGCGCTTGAAAAGTGATAGGGGTAACACTGTGAAAGTAAATGTGTATTGG
TTTAACCATTTACAATACGAAACGGATAGAGACGCGAAATTAACGGGAGC
GAGAAGTGGAACTATAACACCGATTAATATCCCGCGTACATTAATACGCG
ATAAGACATACGAGAAAAAACGGGGGGATAACATAATTACCGGTATATAA
TATATCCCCCACGTATATATTGCCCGAATTGGATATCGGTATCCGAGAAA
GAGCAGATATACCGCGAACATGCGGCATCTGAAAATCGGGCGTATATAAA
GCGTGTATATATCGCCTGTGGCGCCGTCACAGGGTATAGAGGCATATACA
CAGGTGTGCGCGGTACACATATGCTCGTTATAGCGGATTCGCGCGGAACA
GCGCCATTTGTGGCGGAGTAGACAGAATCGTGCAGAAGATTACGGCAGAA
TAATCCGGTCACACGGATAGAAATCGGTATAGGGCGTAGCGCGTTTTATC
GACCAAAGGGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d23.b1 MSMg01no114_d23.b1 CHROMAT_FILE:
MSMg01no114_d23.b1 PHD_FILE: MSMg01no114_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:53 2005
         (283 letters)



>mm_chr18_48125998_48126680
          Length = 683

 Score =  470 bits (243), Expect = e-137
 Identities = 273/283 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgctcatgagatccagctgtagaaggaacatgaaaatacagaataaggacagaatcct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgctcatgagatccagttgtagaaggaacatgaaaatacagaataaggacagaatcct 260

                                                                       
Query: 61  taatattcccagaaactctttttaagacttggtgaaaacaaaatcctttcttcatagaaa 120
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 taatattcccagaaactcttcttaagacttgttgaaaacaaaatcctttcttcatagaaa 320

                                                                       
Query: 121 aattcaagccaaaagatattttgaagttgttaaaataactacataagcagtaaacatcaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aattcaagccaaaagatattttgaagttattaaaataactacataagcagtaaacatcaa 380

                                                                       
Query: 181 catggtttccccataatggaaaaatatgctgagcaggttagatacaattttgtattaagg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 catggtttccccataatggaaaaatatgctgagcaggttagatacaattttgtattgagg 440

                                                      
Query: 241 actaggtaatttggggtgagtgactagggcctattcagcaggg 283
           || |||  ||||| |||||||||||| ||||||||||||||||
Sbjct: 441 acaaggggatttgcggtgagtgactacggcctattcagcaggg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)