Query= MSMg01no115_i24.b1 MSMg01no115_i24.b1 CHROMAT_FILE:
MSMg01no115_i24.b1 PHD_FILE: MSMg01no115_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:32 2005
(184 letters)
>mm_chr18_4256133_4256715
Length = 583
Score = 340 bits (176), Expect = 2e-98
Identities = 182/184 (98%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 1 gtgatgtcagtgataaccagtgaacaggggacttgctgagcaggcacctgccagggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgatgtcagtgataaccagtgaacaggggacttgctgagcaggcacctgccagggaatt 260
Query: 61 ctaacactcttttcccattatcaatccctattatatggaagttagacttggctggagatt 120
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctgacactcttttcccattatcaatccctattatatg-aagttagacttggctggagatt 319
Query: 121 tctataagccatttctgtcatttcaggaaattattataacagagactatatatgaaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctataagccatttctgtcatttcaggaaattattataacagagactatatatgaaactc 379
Query: 181 agga 184
||||
Sbjct: 380 agga 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 583
Length adjustment: 8
Effective length of query: 176
Effective length of database: 575
Effective search space: 101200
Effective search space used: 101200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no115_i24.g1 MSMg01no115_i24.g1 CHROMAT_FILE:
MSMg01no115_i24.g1 PHD_FILE: MSMg01no115_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:32 2005
(574 letters)
>mm_chr18_4400366_4401339
Length = 974
Score = 965 bits (499), Expect = 0.0
Identities = 552/579 (95%), Gaps = 18/579 (3%)
Strand = Plus / Minus
Query: 1 ccaaattggaaggtttttggcaaaagtgtagaactgagaaagaaaacaagggaaacaaac 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 845 ccaaattggaaggtttttggcaaaagtgtagaactgagaaa-caaacaagggaaacaaac 787
Query: 61 aaacaaacaaaaaacaaaccctcaattaaaatatagtttaatagattttaagttagatat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaac-------aaacaaaccctcaattaaaatatagtttaatagattttaagttagatat 734
Query: 121 aaaaaatgatatattgtaatataggtcagaagtaaacagagataaaaggagagatttaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 733 aaaaaatgatatattgtaatataggtcagaagtaaacagagataaaaggagagacttaga 674
Query: 181 agggaagcaaacaaaaaggtttaacagatgtagctggatgtttagaataaaggtgaatgg 240
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 673 agggaagcaaacaaaaaggtttaacagatgtagctggatgcttagaaaaaaggtgaatgg 614
Query: 241 agccag-----ttttttttttgaaaataaagttcataagcaaatgggtcctacccaagta 295
|||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agccagggcaa-----tatttgaaaataaagttcataagcaaatgggtcctacccaagta 559
Query: 296 aaggcactcggggagccactaataccagaagactggttggtattagtcaaccttagggcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaggcactcggggagccactaataccagaagactggttggtattagtcaaccttagggcc 499
Query: 356 tgttcctcaggggtgatcaatgattaagaaggtcctacatttcagtgatactggcatgct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgttcctcaggggtgatcaatgattaagaaggtcctacatttcagtgatactggcatgct 439
Query: 416 actgcaatcaaagagaacagatggaatttgtttagaatgaaacagaggtggcaagccagt 475
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 438 actgcaatcaaagagaacagatggaatttgtttagaataaaacaaaggtggcaagccagt 379
Query: 476 cagttatagacttaaaaccctttgccatgagttaattgtccaaatgcataaaggatctct 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 378 cagttatagacttaaaaccctttgccatgagttaattgtccaaacgcataaagtatctct 319
Query: 536 gcaggcccattatacttttcagtctactttcactatatt 574
|||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcaggcccattatacttttcagtctactttcactatatt 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
