BAC Information

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BAC

Clone NameMSMg01-117N08
Chromosome18 (Build37)
Map Location 31,138,942 - 31,139,518
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117N08.T7 (MSMg01no117_n08.b1)MSMg01-117N08.TJ (MSMg01no117_n08.g1)
ACCAG328861AG328862
length695695
length of high quality
(start - end)
512 (46 - 557)578 (74 - 651)
definitionCHROMAT_FILE: MSMg01no117_n08.b1 PHD_FILE: MSMg01no117_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:30 2005CHROMAT_FILE: MSMg01no117_n08.g1 PHD_FILE: MSMg01no117_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCAGTTTACGTTTCTTTTATAGCTTCTATTTCAATTCTCAGGAG
TTGAAAAGTTCCTTCACCTGTTTTGTTTTGTTTTTTTGTTTTTTTTTTCA
TGGCTTTTTTGTCATTCTTTAAGGGGTTTATTGACTTCCTCCAAATTTTG
TGTTTATATTTTCCTTGTTTTTTTTTTTAAGGGATTTTAACTTTTTTTCT
TTATAGACCTCCATCATCTTCATAAAGCTGGTTTTAAGGTTGTTTTCTTG
TGTTTCAACTTCAGTGAAATATTGAAGTCTTGCTGTCATAAATTAGCTGG
ACTCCTGTGGTTCCTTACTACCCTTGCTGTTTTTAATTGTGTTCTTTTTA
AAAAATATGTATTTATTTGTTTTTATAGCCCATATTTTATTCCCTCCTTC
CCCACTCACCCTCTGACTGTTCTACATCCCATACCTCGTCCTCATCTCCC
TATCTTCTTACACCAATGTAATTTATGATGATTATAGGTCTTAACTGATT
TCTGACTTTATCTTTGCTGGATGGATGTTTTGCCCATTTGTTTCTGTTTC
CCCTTTGCTCTTTTCGCGGCTGTAGCTCTGATAGGCTGCTTTTCCCCTGA
ACACTAAGGAGTCTCTGACTTGGTTGCGGCATGACCTTTTGCAAT
NAACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCCCGAAGAACTATTTCTAAACAGAT
AGACATCATTCTTTGCCCTGCTAACCTTTCCTTTCCACTACCTCTGGTGG
GTGGTGGGCTAGATGAGAGGTTAAAACATTTAAATACACATGTTGAAGTA
GGTTTTGAAAAATACAATCCTACAATTCATAAGCCTTCTACTCTCAACCT
TCTCACTATGTGCTCAAAACTGCTTCTTGATAATGTGGTATGATTCTATT
ACACTAAAATTAAGCAAAAAGACTCCTTTTCCCTTGGAGTAAGTAATCTC
TGCGGTAATTCGATGCTTCTTGCCTTCATAGAAAGATTTAGTGTAGAAGA
TGATTTTTACACTCTAACCTGTTTAGGAGCAATTAATATTGCATTATCCT
CTAATTCCACTTAGGGCACTGTCACAAATAGACGTTCCATAGCTATTAGG
AAATGTAAGAATCTAATATTCATCAGAGTCTAGATATGAGACACAGGGCT
GATTTATTCTAGATCCAAGCATTGAATTGCATCTTTTTGTTAAAACGCTG
AACATAAAAGGCTGGAATACTAGATGATAGAAAATTTACTCATTCACAAG
CGCTACACTGTTATAAGAAACCCAGGGGAATGTCCTCTTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_n08.g1 MSMg01no117_n08.g1 CHROMAT_FILE:
MSMg01no117_n08.g1 PHD_FILE: MSMg01no117_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:30 2005
         (578 letters)



>mm_chr18_31138742_31139719
          Length = 978

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccgaagaactatttctaaacagatagacatcattctttgccctgctaacctttcctt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccaaagaactatttctaaacagatagacatcattctttgccctgctaacctttcctt 260

                                                                       
Query: 61  tccactacctctggtgggtggtgggctagatgagaggttaaaacatttaaatacacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactacctctggtgggtggtgggctagatgagaggttaaaacatttaaatacacatgt 320

                                                                       
Query: 121 tgaagtaggttttgaaaaatacaatcctacaattcataagccttctactctcaaccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagtaggttttgaaaaatacaatcctacaattcataagccttctactctcaaccttct 380

                                                                       
Query: 181 cactatgtgctcaaaactgcttcttgataatgtggtatgattctattacactaaaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactatgtgctcaaaactgcttcttgataatgtggtatgattctattacactaaaattaa 440

                                                                       
Query: 241 gcaaaaagactccttttcccttggagtaagtaatctctgcggtaattcgatgcttcttgc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaaaagacaccttttcccttggagtaagtaatctctgcggtaattcgatgcttcttgc 500

                                                                       
Query: 301 cttcatagaaagatttagtgtagaagatgatttttacactctaacctgtttaggagcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcatagaaagatttagtgtagaagatgatttttacactctaacctgtttaggagcaat 560

                                                                       
Query: 361 taatattgcattatcctctaattccacttagggcactgtcacaaatagacgttccatagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatattgcattatcctctaattccacttagggcactgtcacaaatagacgttccatagc 620

                                                                       
Query: 421 tattaggaaatgtaagaatctaatattcatcagagtctagatatgagacacagggctgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaggaaatgtaagaatctaatattcatcagagtctagatatgagacacagggctgat 680

                                                                       
Query: 481 ttattctagatccaagcattgaattgcatctttttgttaaaacgctgaacataaaaggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattctagatccaagcattgaattgcatctttttgttaaaacgctgaacataaaaggct 740

                                                
Query: 541 ggaatactagatgatagaaaatttactcattcacaag 577
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ggaataatagatgatagaaaatttactcattcacaag 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)