Query= MSMg01no117_o04.b1 MSMg01no117_o04.b1 CHROMAT_FILE:
MSMg01no117_o04.b1 PHD_FILE: MSMg01no117_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:34 2005
(523 letters)
>mm_chr18_11045567_11046489
Length = 923
Score = 882 bits (456), Expect = 0.0
Identities = 513/546 (93%), Gaps = 27/546 (4%)
Strand = Plus / Plus
Query: 4 ggaattcatttagtacacaggcagttaagcagttagctcacatacaaagttgaaattttg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ggaattcatttagtacagaggcagttaagcagttagctcacatacaaagttgaaattttg 238
Query: 64 tgcagtatatgtgcgggtgt-aggtaataattcatagaccttaccatgcacaagcatagc 122
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgcagtatatgtgcgggtgtcag-taataattcatagaccttaccatgcacaagcatagc 297
Query: 123 taccagagctctttgtctttgcaatgtactcataaaggg-tctacccctccctccctccc 181
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 298 taccaaagctctttgtctttgcaatgtactcataaaggggtgtacccctccctccctccc 357
Query: 182 tccctccct---tcc-----------------tccctccctctctctcctttttccttcc 221
||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 358 tccctccctccctccctccctccctccctccctccctccctctctctcctttttccttcc 417
Query: 222 ttc----tagcctttctttaatttttaaattacacttatgtatgtatgtgctcacacaca 277
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttccttctagcctttctttaatttttaaattacacttatgtatgtatgtgctcacacaca 477
Query: 278 cacccttgtcacactcatgagtggaagtcattggtttgtcctgtcaggaaatagctttgc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacccttgtcacactcatgagtggaagtcattggtttgtcctgtcaggaaatagctttgc 537
Query: 338 cttttgagccatcttgcccactgtgtagtcttggctggtctgagaatcatagtgctgccc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttttgagccatcttgcccactgtgtagtcttggctggtctgagaatcatagtgctgccc 597
Query: 398 cagctctgagaacagtgattatgggcatagtcaggacgccttgccttggttttttaaagc 457
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 598 cagctctgagaacagtgattatgggcatagtcaggatgccttgccttggttttttaaagc 657
Query: 458 tgtcttttacagaagcgggaactggaacagagaagttgggcaattcgcccttctcacaca 517
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 tctcttttacagaagcgggaactgaaacagagaagttgggcaattcgcccttctcacaca 717
Query: 518 gaaaat 523
||||||
Sbjct: 718 gaaaat 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_o04.g1 MSMg01no117_o04.g1 CHROMAT_FILE:
MSMg01no117_o04.g1 PHD_FILE: MSMg01no117_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:34 2005
(417 letters)
>mm_chr18_11106981_11107797
Length = 817
Score = 772 bits (399), Expect = 0.0
Identities = 411/417 (98%), Gaps = 4/417 (0%)
Strand = Plus / Minus
Query: 1 agtagaattgctgacctcagcacctgacgccatctaaacgtcttagaaaacattagtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agtagaattgctgacctcagcacctgacgccatctaaacgtcttagaaaacattagtcat 509
Query: 61 aaacttgtgatcactgtacctagaacttctgagtgcttccatcatagaatgacatccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaacttgtgatcactgtacctagaacttctgagtgcttccatcatagaatgacatccaca 449
Query: 121 aaatggataagagcacagaccttcccttctcagggacaaagaactgacgaagataaaagc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatgaataagagcacagaccttcccttctcagggacaaagaactgacgaagataaaagc 389
Query: 181 agccagcagcatgagtggacaacacagcaagagtatgatctgtacctgtcggttgcttag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 agccagcagcatgagtggacaacacagcaagagcatgatctgtacctgtcggttgcttag 329
Query: 241 aaacagagccagagaccaggctcacctctgaatggccacccctcaccctggcatcacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaacagagccagagaccaggctcacctctgaatggccacccctcaccctggcatcacacc 269
Query: 301 agacagcagattgggagctagctcccccagcactgtactcatacttcccacaccctcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agacagcagattgggagctagctcccccagcactgtactcatacttcccacaccctcccc 209
Query: 361 ttcctgaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcctga----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
