Query= MSMg01no117_o06.b1 MSMg01no117_o06.b1 CHROMAT_FILE:
MSMg01no117_o06.b1 PHD_FILE: MSMg01no117_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:34 2005
(203 letters)
>mm_chr18_11045687_11046289
Length = 603
Score = 290 bits (150), Expect = 4e-83
Identities = 198/228 (86%), Gaps = 25/228 (10%)
Strand = Plus / Plus
Query: 1 gctaccagagctctttgtctttgcaatgtactcataaaggg-tctacccctccctccctc 59
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 176 gctaccaaagctctttgtctttgcaatgtactcataaaggggtgtacccctccctccctc 235
Query: 60 cctccctccct---tcc-----------------tccctccctctctctcctttttcctt 99
||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 236 cctccctccctccctccctccctccctccctccctccctccctctctctcctttttcctt 295
Query: 100 ccttc----tagcctttctttaatttttaaattacacttatgtatgtatgtgctcacaca 155
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccttccttctagcctttctttaatttttaaattacacttatgtatgtatgtgctcacaca 355
Query: 156 cactcttttgtcacactcatgagtggaagtcattggtttgtcctgtca 203
||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cacacccttgtcacactcatgagtggaagtcattggtttgtcctgtca 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space: 116025
Effective search space used: 116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no117_o06.g1 MSMg01no117_o06.g1 CHROMAT_FILE:
MSMg01no117_o06.g1 PHD_FILE: MSMg01no117_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:35 2005
(241 letters)
>mm_chr18_11107108_11107748
Length = 641
Score = 451 bits (233), Expect = e-131
Identities = 239/241 (99%)
Strand = Plus / Minus
Query: 1 agtagaattgctgacctcagcacctgacgccatctaaacgtcttagaaaacattagtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagaattgctgacctcagcacctgacgccatctaaacgtcttagaaaacattagtcat 382
Query: 61 aaacttgtgatcactgtacctagaacttctgagtgcttccatcatagaatgacatccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacttgtgatcactgtacctagaacttctgagtgcttccatcatagaatgacatccaca 322
Query: 121 aaatggataagagcacagaccttcccttctcagggacaaagaactgacgaagataaaagc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgaataagagcacagaccttcccttctcagggacaaagaactgacgaagataaaagc 262
Query: 181 agccagcagcatgagtggacaacacagcaagagtatgatctgtacctgtcggttgcttag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agccagcagcatgagtggacaacacagcaagagcatgatctgtacctgtcggttgcttag 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
