BAC Information

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BAC

Clone NameMSMg01-118G14
Chromosome18 (Build37)
Map Location 67,952,384 - 67,952,565
singlet/doubletsinglet
Overlap geneSeh1l
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2
Downstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G14.T7 (MSMg01no118_g14.b1)MSMg01-118G14.TJ (MSMg01no118_g14.g1)
ACCAG329292AG329293
length730692
length of high quality
(start - end)
147 (70 - 216)173 (381 - 553)
definitionCHROMAT_FILE: MSMg01no118_g14.b1 PHD_FILE: MSMg01no118_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:15 2005CHROMAT_FILE: MSMg01no118_g14.g1 PHD_FILE: MSMg01no118_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGATCCGCGG
AATTCTATTTTCTATCATGAATTACCTTTGTTGTTTTATTCAGCTGTTTG
TTTTCTTGGACATCAATTATGAGTCTTTTTCCTATCCTCTTTAATTAACA
CCTTTATTTAGGTATCATTTCGGGGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTACATGTGTGTAAGAGCCGCTAACACAACTTTGAAATGACTAATG
TCCTCCTTTTAAACTCTGTACCCTTAATTTCACCCTAACCCCTCTTCACC
CAAACATTAACTCCAACTACCACTACTTTTACAACACTAACAAACAAGCA
GAAACAACAACACTTTTTTTTCACCCCCCCCCCCTCCGTCATGTATAACC
ACATAACTATCAAATTCCCCCCCCCCCAAAACAACAACTATTCCTTTCTC
ACACTACCCTTCCCCTCTAAACACCCCAAAACCACATACCACCACACAAA
TCACACCACTCTCCCCCACTCCCATCTCCCTAACTCTCTTAACCCTCCCC
ACCCACTCACCCTCCATCAAACACATTAATAATAATACCCCCATAACGCC
CTCAACAACCCCACCCCCTTTCCACCAAATCATAATCACACACCATAATA
CCCCACCTCCACTCACACCATCCACATTCCACACACTCCACCATTATCAC
CCTCCCCTCCTATCCCCCCACCACCTCCCC
NACGATGAAGTGGGAGGCCTGGCGGCGCCTGTTTCCGACCTGGGGTGAAC
TATAGAAGGTTACAAGACTACAGTGGNCAGNAAAAATGTTAGTCGTTTTA
TGATTCTGTGTTCTTTTCTCCAGCAGTGAAAGGAGATGTTGTTTAATAGA
GCTGACTCTTAGATAAATATTCGGATGTTTTTAGTGCCTCTTGGGTAGGC
TTTGTATCAAATCACATTGAAATTTTAAATAAAGTCCATAACTACAGCTT
TGTGATACCAGTGTGTGAAATGATTGGTCTTTTGTGTGTATAATAACTAA
GAGAAAGCGGTAAAATTTTAGATTCNTTAAGCTTAGGCTCTTCTGCATAC
ATTTAAAATTTTTTTTGACCTCCTCTACCAGTCAGTTTTTGTCATTCATA
TTTCAAATATGTAAATTTGCAATATAAAAAATGCCTTTGAGTATAATTTG
GAATAGAGGTTGGGAAACTTCAAAATTCCACTTTAAAATGGCTCTGTGTT
ACCCTATTGTAACCTATTTCTTAATCAAGAAATTTTGCTGTTTGATTTTG
AGGTTAAGCATTTGCAACTATAGATAGTGTTTCCAGTTACTATGGAGAAG
ACCAAATTATTTTATGAAGGGAAGCATAGTAAAGTTAATTTTTAAAAATC
TGGTTTTAGGGTTATTTTTTTAGTTCTATGTCATTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g14.g1 MSMg01no118_g14.g1 CHROMAT_FILE:
MSMg01no118_g14.g1 PHD_FILE: MSMg01no118_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:15 2005
         (173 letters)



>mm_chr18_67952193_67952765
          Length = 573

 Score =  313 bits (162), Expect = 3e-90
 Identities = 173/182 (95%), Gaps = 9/182 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagtttttgtcattcatatttcaaatatgtaaatttgcaatataaaaa---------a 51
           ||||||||||||||||||||||||||||||||||||||||||||||||||         |
Sbjct: 192 gtcagtttttgtcattcatatttcaaatatgtaaatttgcaatataaaaaatttaaaata 251

                                                                       
Query: 52  tgcctttgagtataatttggaatagaggttgggaaacttcaaaattccactttaaaatgg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgcctttgagtataatttggaatagaggttgggaaacttcaaaattccactttaaaatgg 311

                                                                       
Query: 112 ctctgtgttaccctattgtaacctatttcttaatcaagaaattttgctgtttgattttga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctctgtgttaccctattgtaacctatttcttaatcaagaaattttgctgtttgattttga 371

             
Query: 172 gg 173
           ||
Sbjct: 372 gg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)