Query= MSMg01no118_n01.b1 MSMg01no118_n01.b1 CHROMAT_FILE:
MSMg01no118_n01.b1 PHD_FILE: MSMg01no118_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:47 2005
(526 letters)
>mm_chr18_73596967_73597892
Length = 926
Score = 895 bits (463), Expect = 0.0
Identities = 508/523 (97%), Gaps = 2/523 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaagg-tttcccccagccctactgaatgagaattcctgactgctctgcccagc 63
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaggcttt-ccccagccctactgaatgagaattcctgactgctctgcccagc 263
Query: 64 aatctgtgatttcccgcactcagaggactctgcaagcgttcaagttggataacctctact 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatctgtgatttcaagcactcagaggactctgcaagcgttcaagttggataacctctaca 323
Query: 124 gtcggctagcaggaggcagcagagtggagctattagagatgtactgtggagctaatctgc 183
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 324 gtcggctagcaggaggcagcagagtggagctattagagaggtactgtggagccaatctgc 383
Query: 184 tttgtccccgctccaggctccacaaccttggaggtgggcaaccataactgtgttccttta 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tttgtccccgctccaggctccacaaccttcgaggtgggcaaccataactgtgttccttta 443
Query: 244 tcctttggggcctgagtgccttcatttctaggataatcgcactgaacattaccgtatgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctttggggcctgagtgccttcatttctaggataatcgcactgaacattaccgtatgtg 503
Query: 304 aggtgcttaggatagcgcataatgagtgctgcttaagtgtgtacttgtattaggtggaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggtgcttaggatagcgcataatgagtgctgcttaagtgtgtacttgtattaggtggaga 563
Query: 364 atggcggagatggttcccgggcagctctgtcgtgtgagcatcaggcatgagagattcggg 423
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 564 atggcggagatggtttccgggcagctctgtcgtgtgagcatcaggcgtgagagatgcggg 623
Query: 424 gtgtggcaaccgtgctggatacatgcacagggaagatcgtgatgctgtgtaccctgaaat 483
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 624 gtgtggcaagcgtgctggatacatgcacaagaaagatcgtgatgctgtgtaccctgaaat 683
Query: 484 gtttcatttccagaaacggtgtggttttactgattcctcctgc 526
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttcacttccagaaacggtgtggttttactgattcctcctgc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_n01.g1 MSMg01no118_n01.g1 CHROMAT_FILE:
MSMg01no118_n01.g1 PHD_FILE: MSMg01no118_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:47 2005
(588 letters)
>mm_chr18_73706967_73707956
Length = 990
Score = 996 bits (515), Expect = 0.0
Identities = 573/605 (94%), Gaps = 23/605 (3%)
Strand = Plus / Minus
Query: 1 aatgagagctaaccactagagccctatggactttccagtgggtacacaatgggtcccctt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 885 aatgagagctaaccactagagccctatggactttccagtgggtacacagtgggtcccctt 826
Query: 61 ctcccaacaacagtaggtggtagggc---------ccctttgtcctccataggcgacagt 111
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 825 ctcccaacaacagtaggtggtagggccccatggatccctttgtcctccataggcgacagt 766
Query: 112 taggagggaccaacatccatggattcagtgccagtctaacttggctctggtaaagagttg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 765 taggagggaccaacatccatggattcagtgccagtctaacttggctctggtaaa---ttg 709
Query: 172 ggcatgataatgtgggtatgaggtatttctgttttacctgctattgcatcatctttaaca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggcatgataatgtgggtatgaggtatttctgttttacctgctattgcatcatctttaaca 649
Query: 232 tgtccttgatttcattcctatgactcagctggtctatcatcagccctaaaagagttcctt 291
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 648 tgtccttgatctcattcctatgactcagctggtctatcatcagccctaaaacagttcctt 589
Query: 292 agtatttcttacggccttccaactcccccatcatcatggtatctacccccttagttggag 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 588 agtatttcttacggccttccaactcccccatcatcatggtatctacccccttagttcgag 529
Query: 352 ctacttcactcaagcatctaattaggatgcagcctcccacaaccccttctcaccatgttc 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 528 ctacttcactcaagcatctaattaggatgcagcctctcacaaccccttctcaccatgttc 469
Query: 412 acacatgggacagttttcatgttgta--------ttggctttttcttttttttattggcc 463
|||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 468 acacatgggacagttttcatgttgtatttttttttt---ttttttttttttttattggcc 412
Query: 464 tgatgattcataacaaaagcttcgttgtatcttctgcaacattactgctggggccccttc 523
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgatgattcagaacaaaagcttcattgtatcttctgcaacattactgctggggccccttc 352
Query: 524 ccactctatcatcgatgtaaccatcagcccacctcctacttccgtgcacatcattgatgc 583
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctactctatcatcgatgtaaccatcagcccacctcctacttccgtgcacatcattgatgc 292
Query: 584 ctctg 588
|||||
Sbjct: 291 ctctg 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
