BAC Information

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BAC

Clone NameMSMg01-118P10
Chromosome18 (Build37)
Map Location 74,288,080 - 74,288,340
singlet/doubletsinglet
Overlap genenone
Upstream geneRkhd2, Smad4, Elac1, Me2, Mro, Mapk4
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P10.T7 (MSMg01no118_p10.b1)MSMg01-118P10.TJ (MSMg01no118_p10.g1)
ACCAG329701AG329702
length716751
length of high quality
(start - end)
263 (43 - 305)58 (101 - 158)
definitionCHROMAT_FILE: MSMg01no118_p10.b1 PHD_FILE: MSMg01no118_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:58 2005CHROMAT_FILE: MSMg01no118_p10.g1 PHD_FILE: MSMg01no118_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAATTTGCGGCGCTAAACGATCACTATATCGAGAAATGCGCGGAATTC
TCTATATTCTCCTAAAGAATGCTAGTGGAAGACTGACTTCCAGGAAGCTA
GGACAAGGGTCTTAAAGCCCACACCCACAGTGACACACCTATTCCATCAA
GGCCATACCTCTAAATAAATAGAGCCACTTCCTGAGTCAAGCATATTCAA
ACCATGAGAGTACGTAGCACTTGTAAATGTTTTAAAAATATGTGAGGTTG
TATATAAAATAATGGCATTGTTATTAAAAGAAAGAAAAAGAAGTAGGTGA
CCTGGAAGAAATTGGTATATTCCTAGAAAGAAATTGTAGGATAACCGTTT
TCTCTGGATGGAATGCCTCTAGCAACCTATAGAAGTCCTTGTTCCTCAGC
TGTGGTAGGCAAACAAGTAGCAACAATACAGCTGATATCAGGTCTGTGGT
GACAATAATGAGGCTGTTCCCATTCCATCTTGTACCGAAGGACAAGGGCC
ATGATAGTATCTTGTGGTACCTCTGTTCACCTCTTCCTACTCCTTGCGTG
TAGTCCCGCCCTGTATGCTATGTATAGCACAGATCCGCCATACTTCACCG
ACCACGTAACCTTGTTTGCCAACCGCCACTGACTGTGTTGCACCCGGCAT
TCTCTGCTATCGTATCTCGCCTTGATTCCCCCTGTTCCTGTTTCTAACCC
TTAATCCCCTTCGTCT
ATGTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATTTGGGGGCCCAAGGAAAATAATGGTT
AGTCTGAAAAAAAGCTAGCTGTAGCGTTTGTTGCCCGGTCTTTATGTTTA
TTCAGTTTCTGCATTGCGTGACCAGTCTATGTATTGCTAAGCGTCTGTGT
TTATCCAGTCTCTGTCTGATCGATCATTTGTACTAATCCTTTCAAAGTTG
ATTTGTGTGTATATTTTGGAGAAACTCATATTTGATGCAGTCTGTGAATC
ATCTGACATCTTTGCTTTGTGAAGACATTTATGTCTCAGCTGACCACACG
TTCGCGTTCAGCTCTCTTTTACATCCATCTATCCCACTGTATCGTTTATC
GACTCTGACTTACCTAATGTCCCTACAATCAACCTCCAACTTACCTTCCA
TTTTCTTATAAATAACTTATTCATGGATGCAGGTTTATTAACCCCTTTTT
TGCACCTCTCTTTCCTTTTCCCCTTAAATTTGAACTTTTCCCTTTTTCTT
GTTATTACAAACCAACCACTCTATAACCTTTTTTTTTTTTCCCTCCCCCT
CCCCCCTTTCCCTTTTCCCTTTCCACCCTTCTCCCAACTTCCCTACCTCA
TTAATCCCTCCCTCTGTTTTTTATTTTTTTCTTCCACCCCTACCTATTCT
TATTTCCCCCTACCTTCCCTTTCTTTCTTTCCTTTCCTCCTTCCTTTATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p10.b1 MSMg01no118_p10.b1 CHROMAT_FILE:
MSMg01no118_p10.b1 PHD_FILE: MSMg01no118_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:58 2005
         (263 letters)



>mm_chr18_74287878_74288540
          Length = 663

 Score =  484 bits (250), Expect = e-141
 Identities = 259/262 (98%), Gaps = 2/262 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctctatattc-tcctaaagaatgctagtggaagactgacttccaggaagctagga 61
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctatattcgt-ctaaagaatgctagtggaagactgacttccaggaagctagga 261

                                                                       
Query: 62  caagggtcttaaagcccacacccacagtgacacacctattccatcaaggccatacctcta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagggtcttaaagcccacacccacagtgacacacctattccatcaaggccatacctcta 321

                                                                       
Query: 122 aataaatagagccacttcctgagtcaagcatattcaaaccatgagagtacgtagcacttg 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 aataaatagagccacttcctgagtcaagcatattcaaaccatgagagtacgtagcagttg 381

                                                                       
Query: 182 taaatgttttaaaaatatgtgaggttgtatataaaataatggcattgttattaaaagaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taaatgttttaaaaatatgtgaggttgtatataaaataatggcattgttattaaaagaaa 441

                                 
Query: 242 gaaaaagaagtaggtgacctgg 263
           ||||||||||||||||||||||
Sbjct: 442 gaaaaagaagtaggtgacctgg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)