BAC Information

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BAC

Clone NameMSMg01-119A01
Chromosome18 (Build37)
Map Location 76,120,685 - 76,121,157
singlet/doubletsinglet
Overlap geneZbtb7c
Upstream geneLipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672
Downstream gene4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576, EG664805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119A01.T7 (MSMg01no119_a01.b1)MSMg01-119A01.TJ (MSMg01no119_a01.g1)
ACCAG329731AG329732
length711708
length of high quality
(start - end)
522 (43 - 564)498 (70 - 567)
definitionCHROMAT_FILE: MSMg01no119_a01.b1 PHD_FILE: MSMg01no119_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:01 2005CHROMAT_FILE: MSMg01no119_a01.g1 PHD_FILE: MSMg01no119_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTGAAAAGGATGACCTTGAGATTGCATATTTATTAGAAGCAATGACTAT
ATTAAAGATGCCTTTATGGATCGAAGCTGATTATATTCTAGCATATGTAT
TCAGTAGAATACAACAATTTTTTTGACATTATATATATATATATGAACAT
AACAATCCTACAGGTCAGACAACTGTGAAAAGATCGAGCCATGCTTTAAA
GGAGATGCTCATAGCACAGAAAGGGAATATGGGATCTCCATGAGATAGAT
TAAATAATGTTTTATTGACTTTAAATTTTCTAAATGTCAATGAGACAGGT
AGCACAGCTGCTGAAAACCTGGATTTTATAAAGGATTGCTGAGTTAAACC
AGCCCACATATTATAAAGCTGTGCTAATGGAAGGCAGGAAATGTGTTGTA
ATGGGGAAGAGGTTATGTCTTTGTTTTGATAGGAAATGGAAAGCTGTGGA
TGCCTTCTAAGTTAGTAAGATTGATTCGACCAGGAGGCGACACAAAGTGC
AAATTTCTGGCTTCTTTGAAGACTCAGTTGTGCCAGGTGACTTTTGTTTG
TCTGTTTCCTTTTTTTTTCTTTCTCTTTCTCTCTTCGTTTTCGACAGGAT
GTTTGTGATGAAGCAGACATGTGGGAGGATGCTTTGCTGAGAACAGACAT
GTGGTGTTTTT
TGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAGCATCCACTTAACTAATAAATAGTATT
CCTCTTTGCCATTGATCGACTCGGGATTGTAATGAAGAGTTCCGGGGGCA
ATGGCAGAATGTCTTAATTCATGGCATAAACGTCACCAGCCCTTGGGTTC
CTAAGATTGAATGTGTCGGAGAAGAGGGGAATGAAGAGTCCACAGGAATT
AATTCTTGGAACATCCCTGCGGGGTCAGCATTATTATGCCCTGCTTCTAG
GTAGATTTAATATCACAAGTGCTGGGCAGGGCGTCTCGTGCCCAGGGAGG
CTCCATAATCGTTATTAAGTGATGATAGGGCAGATAGGCCAGAGTCGGCT
CTCACTCTGCCAGACCGGCAGTCTTCCTTATGCCCAAGTTAGGAGACTGC
ACAAATGTAGTATTGTGATTATCACAGTGATCGTTACTGCCACCGTGCCT
AATGATGGCTCAGCTCTGCCAGAACCATGGGATAGACCACTGCAAAGAAA
GCAGTGTTCTCTTAGGACAACATGCTGTACAATAAGATAAGAAGCAGGCT
GCTAGAAAACTCTAGACTCACGGAGACCTGCTCCCATTCGACCGTTCTGT
TGGAACCCTCCCTTTGAGCCATTCCTGTATCACAGAGGAACTTTACTATG
AAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_a01.g1 MSMg01no119_a01.g1 CHROMAT_FILE:
MSMg01no119_a01.g1 PHD_FILE: MSMg01no119_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:01 2005
         (498 letters)



>mm_chr18_76120263_76121157
          Length = 895

 Score =  874 bits (452), Expect = 0.0
 Identities = 469/476 (98%), Gaps = 3/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  aatagtattcctctttgccattgatcgactcgggattgtaatgaagagttccgggggcaa 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aatagtattcctctttgccattgatcgactcgggattgtaatgaagagttccgggggcaa 836

                                                                       
Query: 83  tggcagaatgtcttaattcatggcataaacgtcaccagcccttgggttcctaagattgaa 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tggcagaatgtcttaattcatggcataaacgtcaccagcccttgggttcctaagattgaa 776

                                                                       
Query: 143 tgtgtcggagaagaggggaatgaagagtccacaggaattaattcttggaacatccctgcg 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgtgtcggagaagaggggaatgaagagtccacaggaattaattcttggaacatccctgcg 716

                                                                       
Query: 203 gggtcagcattattatgccctgcttctaggtagatttaatatcacaagtgctgggcaggg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gggtcagcattattatgccctgcttctaggtagatttaatatcacaagtgctgggcaggg 656

                                                                       
Query: 263 cgtctcgtgcccagggaggctccataatcgttattaagtgatgatagggcagataggcca 322
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 655 cgtctcgtgcccagggaggctccataatcgttattaagtgatgatagggtagataggcca 596

                                                                       
Query: 323 gagtcggctctcactctgccagaccggcagtcttccttatgcccaagttaggagactgca 382
           ||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 595 gagtcggctctcactc---cagactggcagtcttccttatgcccaagttaggagactgca 539

                                                                       
Query: 383 caaatgtagtattgtgattatcacagtgatcgttactgccaccgtgcctaatgatggctc 442
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 538 caaatgtagtattgtgattatcacagtgatcattactgccaccgtgcgtaatgatggctc 479

                                                                   
Query: 443 agctctgccagaaccatgggatagaccactgcaaagaaagcagtgttctcttagga 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agctctgccagaaccatgggatagaccactgcaaagaaagcagtgttctcttagga 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 895
Length adjustment: 10
Effective length of query: 488
Effective length of database: 885
Effective search space:   431880
Effective search space used:   431880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)