Query= MSMg01no119_m19.b1 MSMg01no119_m19.b1 CHROMAT_FILE:
MSMg01no119_m19.b1 PHD_FILE: MSMg01no119_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:03 2005
(484 letters)
>mm_chr18_70450831_70451718
Length = 888
Score = 816 bits (422), Expect = 0.0
Identities = 469/486 (96%), Gaps = 6/486 (1%)
Strand = Plus / Plus
Query: 1 tatgtaggtaagtatttgtgggtctactcggctgtgaccatctcagttatagattatacg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtaggtaagtatttgtgggtctactcggctgtgaccatctcagttatagattataca 260
Query: 61 ttgtacttctgatgcaaattagtggagctacatcaacaatactaacaactgaagtgggag 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ttgtacttctgatgcaaattagtggagctacatcaacaatactaacaattgaagtgggag 320
Query: 121 aaaacaaacatctagcaaatattgtcagtt---atgaaggacggaaaggatttgg-tttg 176
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct: 321 aaaacaaacatctagcaaatattgtcagttatcatgaaggacggaaagaatttggatttg 380
Query: 177 tttatataagtaactaaac-tgttttactctgggttttgtttttgctttcaaatgttttt 235
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatataagtaact-aacgtgttttactctgggttttgtttttgctttcaaatgttttt 439
Query: 236 tatgtcatgtgctagtatttatttattgcctaatgtgtcctaagaaattgaacatttcat 295
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 tatgtcatgtgctagtaattatttattgcctaatgtgtcataagaaattgaacatttcat 499
Query: 296 gtgatctgtaatcaatgaaacccaacaggtcagctatctgaacattccatcttatgagag 355
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 500 gtgatctgtaatcaatgaaaccgaacagttcagctatctgaacattccatcttatgagag 559
Query: 356 catttcagctaacgttgataatgccttggtacagggtgagacctcgctgactggatattc 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 catttcagctaacgttgataatgccttggtacagggtaagacctcgctgactggatattc 619
Query: 416 tgctctttgttgtaaatgctgcagctcacgtcctgacttttattgctgttttactttgtc 475
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 620 tgctctttgttataaatgctgcagctcaggtcctgacttttattgttgttttactttgtc 679
Query: 476 tctgat 481
||||||
Sbjct: 680 tctgat 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 888
Length adjustment: 10
Effective length of query: 474
Effective length of database: 878
Effective search space: 416172
Effective search space used: 416172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_m19.g1 MSMg01no119_m19.g1 CHROMAT_FILE:
MSMg01no119_m19.g1 PHD_FILE: MSMg01no119_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:03 2005
(546 letters)
>mm_chr18_70587193_70588138
Length = 946
Score = 1033 bits (534), Expect = 0.0
Identities = 543/546 (99%)
Strand = Plus / Minus
Query: 1 aaagctgctggtaatgtggacgccaatgattcatgcaaacctttcccatgctttttgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaagctgctggtaatgtggacgccaatgattcatgcaaacctttcccatgctttttgtcc 687
Query: 61 ctggagaccattttcccagtacccggtgcaacttaaataaatgttctttgagccagtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctggagaccattttcccagtacccggtgcaacttaaataaatgttctttgagccagtttc 627
Query: 121 atctctgtttattgggtataaaagagtaaaatctgagaagaaaaacaaaccctttcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atctctgtttattgggtataaaagagtaaaatctgagaagaaaaacaaaccctttcagcc 567
Query: 181 cattaggatggatcttctttcaaggatgtcttataaaatgatttgtgggagattgcttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cattaggatggatcttctttcaaggatgtcttataaaatgatttgtgggagattgcttta 507
Query: 241 cagtttataacattgtgttcccacctggcctgggcccgaggagttcagaaatacgaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagtttataacattgtgttcccacctggcctgggcccgaggagttcagaaatacgaagac 447
Query: 301 agctgtaaaacagcaaagaaaattcaatgttagtgtttgtctaaactgccaccattcgat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 agctgtaaaacagcaaagaaaactcaatgttagtgtttgtctaaactgccaccattcgat 387
Query: 361 caaagactggggcagaattcttggactttctcccgtgcaagttttacacttgtatatttt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 caaagactggggcagaattcttggactttctcccgtgcaagttttagacttgtatatttt 327
Query: 421 ctctgtgaagcatttgcattcataaagttcatacatgtgtttaatcagatgggatctatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctgtgaagcatttgcattcataaagttcatacatgtgtttaatcagatgggatctatt 267
Query: 481 tcagtccataactggaggtgctgacctctggctttcaacttttaaatagcacatataaat 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 tcagtccataactggaggtgctgacctctggctttcaacttttaaatagtacatataaat 207
Query: 541 attagt 546
||||||
Sbjct: 206 attagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
