BAC Information

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BAC

Clone NameMSMg01-120B09
Chromosome18 (Build37)
Map Location 87,873,530 - 87,873,914
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B09.T7 (MSMg01no120_b09.b1)MSMg01-120B09.TJ (MSMg01no120_b09.g1)
ACCAG330541AG330542
length710717
length of high quality
(start - end)
420 (71 - 490)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no120_b09.b1 PHD_FILE: MSMg01no120_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005CHROMAT_FILE: MSMg01no120_b09.g1 PHD_FILE: MSMg01no120_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATTACGGAAAAGAATTGCAGAGCAGTAGGAGCAGTAAGTTTGC
GGATCACATTTAATCCATACACAAGAAGGGAAAGCAGAAAGTTGAGTGAG
GCTATAAAACCTCAATGCCTGAGCACAATGACATACTTCCTCCCCTATGC
TCTATCTCCTAATAGTTCCATAAGCTCTCCAACAATGCCATCAACTCTGA
AGCAAGTGTTCAACTACATGATCCCATAGGAGACATTTCTTATTGAAAAC
TCAACAGCAAAATTTACTATTATAGCCTATCAGATACCTAATGTATAGAT
AAACACTGTATTTCTAAGGCACGGTTATCATTTCTTTATGTTTATCTCTA
TTATTTTGGTCAGTATGAACCAAGCTAAAAAATAATTGGTTAAACAAGCC
AAATTGAAGCGAGGATGGAAATGGCACTTATTAATAATACATCAGTTATA
GTAGTGAAGTCTAAAAGTAGCAGATTGTGAGAAGCATCTACAAAAAAACC
GTGGTTCAGAAAGTGTAAGATGCATTTGATAGTGGGGAATTTCCCGTGAT
GTCCTTAGCAAGACCAGAAGCTGATTTTGTTCCTTTGCATCAGAGAGTTG
ATACTGTGAAACACAAAGATGTAGCCCAAGAGCTTACTTACTGTTCACCA
ACAAAACTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTCGCGGAATTCAACACCCCACTCTCATCAATGG
ACAGATCCTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAA
GTTAAGAAACAAATTGATTTAATAGATATATACAGAACATTTTATCCTAA
AACAAAAGGATATACCTTCTTCTCAGCACCACATGGTACCTTCTCCAAAA
CTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATT
GAAATTGTCCCATGCATCCTATCATTTCACCATGGACTAAGGCTGATCTT
CAATAACAACATAAATAATACAAAGCCAACATTCACATGAAAACTGAACA
ATATTCTCTTCAATGATACCTTGGTCAAGAAGAAATAAAAAAAGAAATTA
AAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACAGACCCAAAGCTA
TGGGACACAACGAAAGCATTCCTGAGAGGAAAACTCATAGTTCTGAGTAT
ATACCATCTTTATATCTCAAACTTACTGTTTTGCTTCTGAGTTTATTGGT
ACCTTAGGTCAGACTTGGACACATTCTGATGATGAAAATAACAATGACGC
CCGTTACCCTCCATGATGCAGCCATAACATAGAATACAATTTTAGTTCCT
TCATCCAACATGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b09.b1 MSMg01no120_b09.b1 CHROMAT_FILE:
MSMg01no120_b09.b1 PHD_FILE: MSMg01no120_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:25 2005
         (420 letters)



>mm_chr18_87873094_87873914
          Length = 821

 Score =  690 bits (357), Expect = 0.0
 Identities = 378/385 (98%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 37  catttaatccatacacaagaagggaaagcagaaagttgagtgaggctataaaacctcaat 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 catttaatccatacacaagaagggaaagcagaaagttgagtgaggctataaaacctcaat 762

                                                                       
Query: 97  gcctgagcacaatgacatacttcctcccctatgctctatctcctaatagttccataagct 156
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 761 gcctgagcacaatgacatacttcctcccctatgctctatatcctaatagttccataagct 702

                                                                       
Query: 157 ctccaacaatgccatcaactctgaagcaagtgttcaactacatgatcccataggagacat 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctccaacaatgccatcaactctgaagcaagtgttcaactacatgatcccataggagacat 642

                                                                       
Query: 217 ttcttattgaaaactcaacagcaaaatttactattatagcctatcagatacctaatgtat 276
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 641 ttcttattgaaaactcaacagcaaaatttacaattatagcctatcagatacctaatgtat 582

                                                                       
Query: 277 agataaacactgtatttctaaggcacggttatcatttctttatgtttatctctattattt 336
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 581 agataaacactgtatttctaaggcacggttatcatttttttatgtttatctctattattt 522

                                                                       
Query: 337 t-ggtcagtatgaaccaagctaaaaaataattggttaaacaagccaaattgaagcgagga 395
           | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 521 ttggtcagtatgaaccaagctaaaagataattggttaaacaagccaaattgaagtgagga 462

                                    
Query: 396 tggaaatggcacttattaataatac 420
           ||||||||| |||||||||||||||
Sbjct: 461 tggaaatggtacttattaataatac 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)