BAC Information

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BAC

Clone NameMSMg01-120B21
Chromosome18 (Build37)
Map Location 40,467,675 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B21.T7 (MSMg01no120_b21.b1)MSMg01-120B21.TJ (MSMg01no120_b21.g1)
ACCAG330565AG330566
length713716
length of high quality
(start - end)		652 (47 - 698)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no120_b21.b1 PHD_FILE: MSMg01no120_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:27 2005CHROMAT_FILE: MSMg01no120_b21.g1 PHD_FILE: MSMg01no120_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTG
GCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATG
GTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAAGGCTCCACTCAC
TAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGAATAGCA
GTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAAT
TTCTACTTCATGTTTATTTTTTTTTTTTTTATTTTTTTTGAGACAGAGTT
TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG
CCTCGAACTCAGAAATACACCTGCCTCTGCCTCCCGAGTGCTGTGATTAA
AGGCGTGCACCACCACGCCAGGCCCCATGTTTAATGTTTAGTAAACATTT
AATAAACATTTAATAAACATTGTGAAGGTCTGAAGAGATGGATCAGCAGT
TAAGAGCATTGACTTTTCTTGCAGAGGTCCTGAGTTCAATTCCCAGGAAT
CACATGGTGCCTTTGGAATCCGATGCACACTTTTGGTGTGTGTTGGAAGA
CAGCTGCAGTGTACTCATATAAATAAAAAATAAATAAAACATTCAAAAAT
AAAGTAAAACAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGAC
TTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAG
TTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACA
TGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAACAT
AGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAG
ATAGCTCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATTTTA
TTGAGTATATGGTGAAAGAGGGAAAATGGCTCGAAAAGGAGGGAGGGCAG
ACTGTCTTCCCATGCTGGGATCATTCATGCCTTAAGAAGGAATGCAGGAG
GCTGGAGAGATGGCTCAGCGGTTTAGAGCCCTGACTGCTCTTCTGAAGAT
CCTGAGTTCAAATCCCAGCAACCAAATGGGTGGGTGGTTCACAACCACCC
ACAATGAGATCTGGTGCCCTCGTCTAGTGTGTCCTACACTGCTACAGTGT
ACTTACATATAATAAATAAATCTGAAGCAGAAGGGGGAGGAGGGGGAGGA
GGAGGAATTTTTCCTTCTCTTTTATAGCGTTTCCCGTTAGAATCCCATAT
TGCACTCCTGCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b21.b1 MSMg01no120_b21.b1 CHROMAT_FILE:
MSMg01no120_b21.b1 PHD_FILE: MSMg01no120_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:27 2005
         (652 letters)



>mm_chr18_40467527_40468577
          Length = 1051

 Score =  364 bits (188), Expect = e-104
 Identities = 240/266 (90%), Gaps = 15/266 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 399 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 340

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 339 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 281

                                                                       
Query: 125 ccctaacagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctg 184
           | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 280 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 221

                                                                       
Query: 185 tcagcagtttaggaatagcagtttaggaatttgtaaagccaatctggacaatatttaaat 244
            |||||||||||||||              ||||||||||||||||||||||||||| ||
Sbjct: 220 ccagcagtttaggaat--------------ttgtaaagccaatctggacaatatttacat 175

                                     
Query: 245 ggtttggaatttctacttcatgttta 270
           | ||||||||||||||||||||||||
Sbjct: 174 gatttggaatttctacttcatgttta 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space:   668322
Effective search space used:   668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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