BAC Information

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BAC

Clone NameMSMg01-120E02
Chromosome18 (Build37)
Map Location 6,031,321 - 6,031,564
singlet/doubletsinglet
Overlap geneArhgap12
Upstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
Downstream geneKif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120E02.T7 (MSMg01no120_e02.b1)MSMg01-120E02.TJ (MSMg01no120_e02.g1)
ACCAG330668AG330669
length682685
length of high quality
(start - end)
461 (34 - 494)247 (48 - 294)
definitionCHROMAT_FILE: MSMg01no120_e02.b1 PHD_FILE: MSMg01no120_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:38 2005CHROMAT_FILE: MSMg01no120_e02.g1 PHD_FILE: MSMg01no120_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGACGAGGTCCGCGGAATTCAGGCCTATCCCTAAACATGATAAAAGCA
ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGA
AGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCT
ACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAA
AAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACT
TTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCA
GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA
ATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC
TGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA
TAAAATATCTCGGCGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGAT
AAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATTGTAACAATGG
CTATCTTTGCCAAAGCAATCTACAGATTCAATGCACCCCCATTAAAATTC
CAACTTAATTCTTCCATGAATTAAAAAGAGCA
CCTGGTCGNAAGCTGTATGTGAACTATAGAACGTTCTGCAGCGTCAGTCA
CCACTGTTTTCATTTAAGCACTGGCAACTCCAAATGACTTGGACACGATA
ATGTAGCGCCACATCAGAAGGCCTTAATTCAAAACAGGTGCAAGTATGTA
ACACACACACACACTTTAGGACTGTATGATCTTCTGGTTGCCTCACTCAA
AAAATCCCTTGAGGGCTTTTATTATACTTATTTACTATGTGTGTTTGTGT
GTGGGTGGGGTGTCATAGTGCTTGTGTGAAGGTCAAAGAACATCGCTCAA
TATAAGTTCTTGTTCTCTCTCAGGTCCTCAGGTCTCCAGGCCAGCACCTT
TATCAGCTAAGCCGCCTTGCTGGCCTGGATCTAGGAATTTCGATGCTGAA
CCAATGAGTGGTTTTGTTTAATGTGAAGAATAAAACTTGGATGTGTTCTC
TTACCATGCTCTTCGACATGCTCAATGCATAACTTCACAAACTTTGGCAC
TGTCCCATTCTCCCTCTGACACAGATTAGCAAGATTAGATCCAAATACTT
GATCTGAAAGAGATTTTTTTTTTTTAAATGAAGCATCTTGCTTAAGGTAG
GCTCAGGAAATGATTGAATCCTTCAGAGGGCAAGAAAAATTTTGCAGGGA
TCTTACTAACATCTTTCCCACATGCTTCCTTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_e02.g1 MSMg01no120_e02.g1 CHROMAT_FILE:
MSMg01no120_e02.g1 PHD_FILE: MSMg01no120_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
         (247 letters)



>mm_chr18_6031121_6031766
          Length = 646

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccactgttttcatttaagcactggcaactccaaatgacttggacacgataatgtagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcaccactgttttcatttaagcactggcaactccaaatgacttggaca-gataatgtagc 259

                                                                       
Query: 61  gccacatcagaaggccttaattcaaaacaggtgcaagtatgtaacacacacacacacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccacatcagaaggccttaattcaaaacaggtgcaagtatgtaacacacacacacacttt 319

                                                                       
Query: 121 aggactgtatgatcttctggttgcctcactcaaaaaatcccttgagggcttttattatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggactgtatgatcttctggttgcctcactcaaaaaatcccttgagggcttttattatac 379

                                                                       
Query: 181 ttatttactatgtgtgtttgtgtgtgggtggggtgtcatagtgcttgtgtgaaggtcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatttactatgtgtgtttgtgtgtgggtggggtgtcatagtgcttgtgtgaaggtcaaa 439

                
Query: 241 gaaca 245
           |||||
Sbjct: 440 gaaca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)