BAC Information

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BAC

Clone NameMSMg01-120H04
Chromosome18 (Build37)
Map Location 6,691,946 - 6,692,136
singlet/doubletsinglet
Overlap genenone
Upstream geneZeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583
Downstream geneEG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H04.T7 (MSMg01no120_h04.b1)MSMg01-120H04.TJ (MSMg01no120_h04.g1)
ACCAG330814AG330815
length768763
length of high quality
(start - end)
197 (52 - 248)440 (133 - 572)
definitionCHROMAT_FILE: MSMg01no120_h04.b1 PHD_FILE: MSMg01no120_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:53 2005CHROMAT_FILE: MSMg01no120_h04.g1 PHD_FILE: MSMg01no120_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGA
TCCGCGGAATTCTCCCATCTCCATTTCGCTTTCAGATGACTGATCCTGTG
TTCCTCACAGTGTTGTATGGGGAATGACAGGGGCTGAGGGAGGAGCAGGG
AAAGTGTAAACAGAGAGGTGAGGTCCTTCCATTCCCCTTGCTCACAGTGC
TCTGTGTTCTTGGACTATGGAGGTTGATCATTAGAGTCCTAGCATGTGTA
GTTGTAAGAGAGATGACTCAATTCTGCATATTCTCATTTCTCTTCCTTAT
CCCACATAACTATTTCCAGGATGTAGATATGTAAGAAAAAATGTGGATGA
GACCCAGAATCTATCATAATCTCAAAAATCTCAGTCTTGTGGAATTTTTT
TCGCTTGCTTGCTTTGCCTGCTTTTTTGAGAAAGGGTTTTCTTTTGTGTA
TCCCCTGGCCTGCTCTTGGAACTTCACTCCTGGAAAACCCGGCTTTGGCT
TTCGAAACCCCCGAAAATCCTCCCTGGTCTCCTGACTTTCACTAGGTGGG
GGTGATTTAAATGGGTGGGGGCCCTACACCCGGCCTCCCCAATCCTAGCC
CTTGGGGGAATATTTTTCATAACCAATAAAAGGGCGACTTTAATTAGTCC
CGGGGCCCCCCTCCCCCCACTGAAAAAATGCTTTTCGCCCGGTGCGGACC
TCTAAAAATTTCTTATCTCTATAGCGGCAATGGCGGCCTTTATTTCCGCA
AACCTGGTGGTAATATTT
NTTTTAACAACAANNCCCCACCTCTATCCCCTACATTCCCNCCCTCCATT
TTTCCTATACCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCTGGAATCTGTCC
TCACTGCAGGAGGGGTAATCTTTGGGCCTTGGCTTAGGCAATAGGCTCAA
ACTAAAAAAATTTACATTTGAGTTAATGCAAAGCTCAGAGCAGCCTCAGT
GAGGTTTGTGTGGCACTGCTTTTGTCTTGCAAACCCTGCCTAGGGAAGTT
TTTGGACTGTCGTCTCGAGCGAAATTATTTTTAAGCCAAAACAGCATTAT
TACATTATTACAGATCTATACAGGTGTTGTTTAAAATAAAGTTCAAACTT
AAGATTTATAAAAGGTCAACAAGGCTATGGAACTTGTAGTGGCATTACAA
TCTGTTCTTCCTACTCCATGTAGAATTATTATGGATTTGGAGGGTTGTTT
TTCCTTTGTATCCTGATAATTGTAAAGGGTTTGCTTCTAGTGAACTTGTA
ATCATTGGAAAGTGTTGCCTCTAGAAATGGCTAATAGCTTTATATTATGT
AAAAAAGAAAAAAATGCGTCTTTGCTTCAATACAAGAAGTTAGGACTTTG
AATCTTTCACAGTATATTACTCATTATATGGATATTTTATTAAATAATCC
CTCAAAAGGGGAATTTCATTACAAACCTGTTGCTCTTTTACAACGGGGCT
TTTAACATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h04.b1 MSMg01no120_h04.b1 CHROMAT_FILE:
MSMg01no120_h04.b1 PHD_FILE: MSMg01no120_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:53 2005
         (197 letters)



>mm_chr18_6691742_6692338
          Length = 597

 Score =  331 bits (171), Expect = 2e-95
 Identities = 186/191 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctcccatctccatttcgctttcagatgactgatcctgtgttcctcacagtgttg 64
           ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaattctcccatctacatttttctttcagatgactgatcctgtgttcctcacagtgttg 336

                                                                       
Query: 65  tatggggaatgacaggggctgagggaggagcagggaaagtgtaaacagagaggtgaggtc 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 335 tatggggaatgacaggggctgagggaggagcaaggaaagtgtaaacagagaggtgaggtc 276

                                                                       
Query: 125 cttccattccccttgctcacagtgctctgtgttcttggactatggaggttgatcattaga 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 cttccattccccttgctcacagtgttctgtgttcttggactatggaggttgatcattaga 216

                      
Query: 185 gtcctagcatg 195
           |||||||||||
Sbjct: 215 gtcctagcatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)