BAC Information

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BAC

Clone NameMSMg01-120H23
Chromosome18 (Build37)
Map Location 51,733,811 - 51,734,103
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H23.T7 (MSMg01no120_h23.b1)MSMg01-120H23.TJ (MSMg01no120_h23.g1)
ACCAG330851AG330852
length706794
length of high quality
(start - end)
294 (73 - 366)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no120_h23.b1 PHD_FILE: MSMg01no120_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:57 2005CHROMAT_FILE: MSMg01no120_h23.g1 PHD_FILE: MSMg01no120_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCXXXXXXXXXXXXXXXXXXXXXXXXNCACTTTCGGAGTGAGATCCG
CGGAATTCTTTGTTACCAAATAAAGCTATGTAGAGAAAATCCAGTTGCCT
AGATCACAGATGTGGGAAAGTTACCCCTGGTTGGCTTGCATCCTCTGATT
TATTTCACCAATGATCAAAGCAGCTCTGCCCCCTGTCTTAATAAGTGAGC
AACATGTAAAGATTTCCAACTATGTTTTGAATGAAAATTTTTGTCAATGA
AAGTCATTTGTGTTTTTATGCTTAATTAAACCCCCTATTAAAATATTTCT
GGCTTGTTAAAGATCTGTTCTCTATTCTTTGAGAGAGATAGCCACCAGAA
TCATGATGACATAGAATATCACGCTTGGGTTTGGACATCAAGCCATGAAT
CGTTGCCCTTGGCTTCTACTTGGAAAGCAAATTGTCTTGCTGTGTTTTAT
TATTATACAATGGCCACCATGTGATGCGTTGGACTGATCCCTTGTCCCTA
TTATATCAGAAAAGATATACTGTCTTAAGTGCCATCATTCATCTCAAATG
GAGCAAAAAAAAAGGCCACTTAAAGTATATTCAGGGGATCTTTATAATAA
TTATGATCTTAGAAATGGGTAAGACTTGCCCTTGCCATAAGTTTTCTCAA
TAAGTATAGTACACACTCTAAAAATAGAAAGTACTTATATTTTCAAGTAA
CATTAA
NCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAGCAGGGAGGTG
AACTATAGATGTATCAAAAAAATTCTTTAGGCAAAAGGATGAAACTTGAA
AATATCATCCTGAGTGAGGTAACCCAGACCAAAAAGGTCATGAATGCTAT
GTACTCACGGATAAGAGGATATTAGCTAAAAAGTGCAGAATACCTGGGAT
ACACAACCCACAGACCTTAAATTTAATGAACAGGAAGGAAGCCCAAGTTA
GGATACTTGAGTCCCACTTAGAATGGAGAACAAAATAATTAAAGGAGGCA
GAGGGAGGGAGGGATCTGGTTTGTCTTAGGGGATGGGAAGCTCCACTTCC
TCTCCTCATTTTTTTTTTTTCCCCCCCCTCCACACTTTTTAATTATATCT
AAATTACCCCTTTTCTCATCCTTCTTTCTATTTTTCTTCCCTATTAATAT
CTCCCCCTCTCCCTATTTTTATATTTTATTCATATTATATTTTTTTGTCT
TTTATTTATTATTCTCTCTTTTTACTCTGCCTTTTTTTCTTTTCCCTTTT
TTCTTCATTTTTTAACTTTCCAACCCTCTTTATTCCTACTTATTCCTCCC
CCCCCTCCCCTTTTTTCCTATTTTTTTCCTCACTATACCTCTTCTTCTCC
TCTATTCTTTTCATCTACTTTTCTATTTTTCACACTCCTCCACTCTCCCC
TCCTATTCCCCCCAAATTTTATTTCCCACTTCTTCTGTTTTTCTTATTTT
TTTTCACCCCCCCCCCTCCTATTTTACTCCCCCCCTTTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h23.b1 MSMg01no120_h23.b1 CHROMAT_FILE:
MSMg01no120_h23.b1 PHD_FILE: MSMg01no120_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:57 2005
         (294 letters)



>mm_chr18_51733610_51734303
          Length = 694

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   agctatgtagagaaaatccagttgcctagatcacagatgtgggaaagttacccctggttg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agctatgtagagaaaatccagttgcctagatcacagatgtgggaaagttacccctggttg 435

                                                                       
Query: 62  gcttgcatcctctgatttatttcaccaatgatcaaagcagctctgccccctgtcttaata 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcttgcatcctctgatttatttcaccaatgatcaaagcagctctgccccctgtcttaata 375

                                                                       
Query: 122 agtgagcaacatgtaaagatttccaactatgttttgaatgaaaatttttgtcaatgaaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agtgagcaacatgtaaagatttccaactatgttttgaatgaaaatttttgtcaatgaaag 315

                                                                       
Query: 182 tcatttgtgtttttatgcttaattaaaccccctattaaaatatttctggcttgttaaaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcatttgtgtttttatgcttaattaaaccccctattaaaatatttctggcttgttaaaga 255

                                                                 
Query: 242 tctgttc-tctattctttgagagagatagccaccagaatcatgatgacatagaa 294
           ||||||| || |  |||||||||||||||||||||||||||| |||||||||||
Sbjct: 254 tctgttcttc-accctttgagagagatagccaccagaatcattatgacatagaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)