BAC Information

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BAC

Clone NameMSMg01-121M01
Chromosome18 (Build37)
Map Location 82,412,881 - 82,413,177
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121M01.T7 (MSMg01no121_m01.b1)MSMg01-121M01.TJ (MSMg01no121_m01.g1)
ACCAG331786AG331787
length807764
length of high quality
(start - end)
---300 (125 - 424)
definitionCHROMAT_FILE: MSMg01no121_m01.b1 PHD_FILE: MSMg01no121_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:38 2005CHROMAT_FILE: MSMg01no121_m01.g1 PHD_FILE: MSMg01no121_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACCCCCCCCCCACCACCCCCCCCCCCCCCCNCCCCCCCCNCCACAAN
CCCTCCCACCCCACACCCAGACGCCCAACCCCCCACCCCCGTNGTTAGTT
GGGGCCCGCCGGGGGGNNGGGNGAGGGGCGAGCGGGGTTGGGAGGAGGCA
CAGGCGGGGGGGGCGTAATGGGACCCGTGGGCGGACAAGGGGGGGGGGCG
CCCCACTATTGCGAGTAAGGACTTTTCCGTGGCCCGGAGCCTTCACGGCG
GCGGGGGGGAACATCATCCTTCTCTGCTCGAAGTGGCAGGTGTCGTCGCG
TGTGCTTGCGGATTGCCCCCTGCCGTGCCGTTCCCTCTCCGATGGCCCTC
GCCCGGCGCGGGTATTTCGGGCGCGCGGCCTTCTCGTTGTCTCTCCCCCT
TTTTTTATATTCCCACGGCGTTTTCCTTGGCTNNNCCNNNNNNNNNTCCG
GGGTGGTNTTGGGTTGGGGGCTCCTTTTGGGGGTACTTGGTCTTCATAGT
ACGGGGGGGGGGCACCCCCNNTTCGGAGGGAGGGCCTCCACCCTNGGAGC
CCGCCCCGGTTGGTGCCTCGGGNNCGCGCGCCTCGGTAGTNGTGGGGGGG
CGCGGCCTTGATTACGGGACATTCACCGTAAAAGCTGCGNGGNNGAGGGG
GTCGGGCGGGTAAANGTACTTTGCCCCTCCCCAACATGGCGGTNTGGAAG
GGGTGGGGGGGCCAGCCAAAGGGAAGGCAGGGGTTCTAAGGGTGGGGGTT
TACNTCTCCTCCCACGGGGGCCACGTGGGGGAGATCCCCCTGGGGGGGGG
GCACTCC
ACCAAAAAAAAAAAAACAACCANGACCCCAAACCGCCACCCGGCACAANC
AACAACCGATGATATGAGAAGCCTGGCGACCGCCTGGCTCTCAAAATGAG
GTGAACTATAGAAGTTCCCCGAAATTCTCTTGTCCCAAGAAGGGGTAGCT
TTGCACATAATGCCTAGAACACAATTGACGCTCCCACCATATGCACGGTT
AGCTTCAAGCTGGGGCATGCACCCACATTACAGCTACCGCTGGGCCAACC
GAGATTGTAAATTGACACCGCACTGACAGACACTCTCAGATGATGTTATC
CTCAGAAATGAACAGCATGCTCATGATAAAATCAAGGCAGGACAGTAGCT
AACACATGAGCCCACGGGATGTGCCAGGCACTTGACCCATTCCCTCCCCT
TGAGCTGCATGGGTAGTTATAACAATGTGCAAGACAAGGCTGCGCCTCAA
AAGTACCACTGTCCCCACTTACAAACCAGGGCCAAGAAACATCAGGTAAT
AAGGGGCATTTTGCGCCCAGGATACCAATATAAATAGCTGTTGCTACAAG
ATAATCTCTTGTGAAACAGCTTGATACAGCTGAGGACAACTAGAGATCTT
ACAACAGCCACCACACGGAGAGAGACTATTTGTTAAATATAACCCACTAC
GGGGTTGGCCCATACAAGGTACCCAACGCCCTGGGAAGTTCCACTTTTAA
CCCTGCAACCTAAAATCCCCTAACATAAAAAAACGGCCGTGTGTGTGTCT
CCGCGGTGCGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_m01.g1 MSMg01no121_m01.g1 CHROMAT_FILE:
MSMg01no121_m01.g1 PHD_FILE: MSMg01no121_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:38 2005
         (300 letters)



>mm_chr18_82412681_82413379
          Length = 699

 Score =  499 bits (258), Expect = e-146
 Identities = 288/298 (96%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcttgtcccaagaaggggtagctttgcacataatgcctagaacacaattgacgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcttgtcccaagaaggggtagctttgcacataatgcctagaacacaattgacgctcc 260

                                                                       
Query: 61  caccatatgcacggttagcttcaagctggggcatgcacccacattacagctaccgctggg 120
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 caccatatgcacggctagcttcaagctggggcacgcacccacattacagctaccgctggg 320

                                                                       
Query: 121 ccaaccgagattgtaaattgacaccgcactgacagacactctcagatgatgttatcctca 180
           ||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 321 ccaaccgaggttgtaaattgacacc-cgctgacagacactctcagatgatgctatcctca 379

                                                                       
Query: 181 gaaatgaacagcatgctcatgataaaatcaaggcaggacagtagctaacacatgagccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 gaaatgaacagcatgctcatgataaaatcaaggcaggacagtagctaacacgtgagccca 439

                                                                     
Query: 241 cgggatgtgccaggcacttgacccattccctccccttgagctgcatgggtagttataa 298
            ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 440 tgggatgtgccaggcacttgtcccgttccctccccttgagctgcatgggtagttataa 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 699
Length adjustment: 9
Effective length of query: 291
Effective length of database: 690
Effective search space:   200790
Effective search space used:   200790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)