BAC Information

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BAC

Clone NameMSMg01-122A05
Chromosome18 (Build37)
Map Location 74,165,077 - 74,165,343
singlet/doubletsinglet
Overlap geneMapk4
Upstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122A05.T7 (MSMg01no122_a05.b1)MSMg01-122A05.TJ (MSMg01no122_a05.g1)
ACCAG331983AG331984
length8961,090
length of high quality
(start - end)
630 (53 - 682)267 (122 - 388)
definitionCHROMAT_FILE: MSMg01no122_a05.b1 PHD_FILE: MSMg01no122_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:00 2005CHROMAT_FILE: MSMg01no122_a05.g1 PHD_FILE: MSMg01no122_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTAAAAGCACCAAATTAGCATACAAAATCGGCAGCCTCCTTTTAAGGA
ACTCACAAACAGCCCAAGGAAGAAATCAAAGAAACAAACCCTGTCGTCAC
AGCCTTAAAAATACATTGAAATAAACCTAACCAGGTGAAAGGCATTGAAA
AAGAAACGAAGCTACAAAAGATGGAAAGATCAATCATGCTCATCGATTGG
CAAGGTTAATACTATAAGAATGGCCTTCCTACCAAAAACAAATTACAGAT
TCAATACAATATCCATCAAAATTCCAATGCAATTCTTTACAGGAATTGAA
AAAAAATTAAATTTTATATAAACTCACAAAAGACACAGGATAGCCAAAAT
AACCCTTAACAACAACAACAATGTGCTGAAGATGTCACCATTCCAGGTTT
CGAGTTCTACTTATAGCACTATAGCTATAGTACTAACAGCATGGTACTGG
GATGAGAACAGATCACTGGCTAGTGGAATAGAATTTAGGACACACAGATA
AACTTCCACTCCTACAGCCACATAGTTTTTGACAAAGAAGTCCAACAACC
CACACAGGAAAAAAAAAGATCGCATCTTCAACAAATGGTTCTGGACAAAC
TGTGTAGCTGTCTGTAGAAGAGTGAAACTTGGCCCTTGTTTCTCTCTTGT
ACAAAACTCAACTCCAAATCTATCAAGGACCTTATATTATTTTCGTGGCT
GTTGCTGTGATAAAACACCATGACCAAGGCAACTGTCTTATTACTTTCCT
AAAATGCCATGGCTTAACGCCAATTGATAAAAGAAAAGCATTTTAGTTTT
GCAAGTTTGGGTCGTTTCCAGAAGGGTTTAACCGGTTAGGCAATTAATGT
TTTTTTTGGTGCCACTTGTTGGCCTTTTTTAAAAGAATTACCTCCT
TTTTTAAAGCATGGAGGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCCTTAAAAGACTCCTACTGGNCAGCAAGGGCTG
AGNGAGACCTTTAAAACTTCTTTGCTTCTCCATTATGCTTCTCCATCCTT
CCCCAACCGTGGCCCTCTGTGTTGTTCTTTGAGAGCCAAGAGCTCCTTCC
TATTTTCCCTCCTTAAAGACTCAGAGGAGTCAAGAACAAGCAAGAACCAA
GCCCTTAGACCCCACGAAAGCCCAAGTAGAGACCACAGCAGAGGCAGGGA
GTAGACTCACAGCCTGACTTTCAGTGATCTTCCACTTGAATGCAAGAGGA
CAGGATTGCTTTTGTGGGCAAGGCGCACTCTAAGGCAGATTTGTCTTTTG
ATGGGACCCTACCAAGCCTCTGGAAAGAGAGCTTGCAAGTGTTTATACCA
TGCTAGCTGGGATTTATGTCAGTATTTCACAGGGAAGCACACTTCTGGGC
GTGTGTGTGTGTGTGTGTGTGTGCGCACGCGCGCATGTACAAATACACAT
ATTTGCATATTGGAGTTTGTTGTAAGGAATCAGTTTACATGATTAGGGTG
GCTGGTATGTCTTAAACCTGCACACAGAGCCAAGAGCTAGAGACCCAAGA
AGCGCTGATACTGTATCTGTATCTGAAGTCTTGAGGGTGTAGAGCAGACT
CTCTCCTGGCTAGTGAAAGTCTTTCGTTCAGCCTTTCCACTGATTATATG
AAGCCTACCCGTATTGTGCAGTGTGTGAGGTATTCCGTTTTACTTTCTAA
CCCCCCTAACTTTCCCTTTGTAAACCGTCATTTCAAAAAATAACTCCTCC
ACAGAAATCTTTCCCGTAACTTACTTCCGGAACAATTTTTACATCCTTTA
CAAATAACTTTAACCCCTTGTCAATTTAAACCTCATCCCCCTGGGCAATG
GTCTATAAAATCTAAGGGTCTCTTTTAACTTGGTCTTGTTGGGTCCCCCC
AAACTCGTCATTTTAACTAAACAAGTCCCCCTTCCTAGTGCGCCTTTCCA
CTTAACTAAACATCAAATAATAGTGCCGTCGCTATCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_a05.g1 MSMg01no122_a05.g1 CHROMAT_FILE:
MSMg01no122_a05.g1 PHD_FILE: MSMg01no122_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:00 2005
         (267 letters)



>mm_chr18_74164877_74165543
          Length = 667

 Score =  501 bits (259), Expect = e-146
 Identities = 265/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttctccattatgcttctccatccttccccaaccgtggccctctgtgttgttctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttgcttctccattatgcttctccatccttccccaaccgtggccctctgtgttgttctttg 408

                                                                       
Query: 61  agagccaagagctccttcctattttccctccttaaagactcagaggagtcaagaacaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agagccaagagctccttcctattttccctccttaaagactcagaggagtcaagaacaagc 348

                                                                       
Query: 121 aagaaccaagcccttagaccccacgaaagcccaagtagagaccacagcagaggcagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aagaaccaagcccttagaccccacgaaagcccaagtagagaccacagcagaggcagggag 288

                                                                       
Query: 181 tagactcacagcctgactttcagtgatcttccacttgaatgcaagaggacaggattgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tagactcacagcctgactttcagtgatcttccacttgaatgcaagaggacaggattgctt 228

                                      
Query: 241 ttgtgggcaaggcgcactctaaggcag 267
           |||||| |||||| |||||||||||||
Sbjct: 227 ttgtggtcaaggcccactctaaggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)