Query= MSMg01no122_c15.b1 MSMg01no122_c15.b1 CHROMAT_FILE:
MSMg01no122_c15.b1 PHD_FILE: MSMg01no122_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:20 2005
(727 letters)
>mm_chr18_37368234_37369360
Length = 1127
Score = 596 bits (308), Expect = e-174
Identities = 317/320 (99%)
Strand = Plus / Minus
Query: 1 caatttgcctaattaattcacctaaaatgacctttttctcccacaatgattcccaatcca 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 320 caatttgcctaattaattcacctaaaatgaacattttctcccacaatgattcccaatcca 261
Query: 61 agctatgagttaagtgattctaacctgagagaaagagagaaccagtaacacaagggccaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 agctatgagttaagtgattctaacctgagagaaagagagaagcagtaacacaagggccaa 201
Query: 121 cttaaatcaaatcagatattggttagttactaacacaagctttgtgccacccttgcccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cttaaatcaaatcagatattggttagttactaacacaagctttgtgccacccttgcccta 141
Query: 181 gcatatcttacaggcagaacagtattgttgatcacaaggtttgtggttggtttggtattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gcatatcttacaggcagaacagtattgttgatcacaaggtttgtggttggtttggtattt 81
Query: 241 gtgcttctcttttagtagcatgtagagtaccttcctgtagcaaagatgctagaacatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gtgcttctcttttagtagcatgtagagtaccttcctgtagcaaagatgctagaacatagg 21
Query: 301 ggtgaaggcaccagcttgac 320
||||||||||||||||||||
Sbjct: 20 ggtgaaggcaccagcttgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space: 800889
Effective search space used: 800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c15.g1 MSMg01no122_c15.g1 CHROMAT_FILE:
MSMg01no122_c15.g1 PHD_FILE: MSMg01no122_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:20 2005
(675 letters)
>mm_chr18_37244952_37246026
Length = 1075
Score = 1108 bits (573), Expect = 0.0
Identities = 631/675 (93%), Gaps = 38/675 (5%)
Strand = Plus / Plus
Query: 1 atttaattctatggaacatatttgcactttccttattctttaacaggttaatgggctctt 60
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 239 atttaattctatggaacatatttgcactttctttattctttaacagggtaatgggctctt 298
Query: 61 agtttggttctaactctaaccagtttggagttctatgaagcagcgaacatagaaccaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agtttggttctaactctaaccagtttggagttctatgaagcagcgaacatagaaccaggt 358
Query: 121 ctctcgttgacatacttatttttctctgaatatatatatatatatatatatatatatata 180
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctctcattgacatacttatttttctctgaatatatatatatatatata------------ 406
Query: 181 tatatatatatatatatatatatatactcagcagtggaattgctggatcatttgtcttat 240
|||||||||||||||||| |||||||||||||||
Sbjct: 407 --------------------------ctcagcagtggaattgctagatcatttgtcttat 440
Query: 241 tttaaatttcaaaaagatttatttatctatttctttttgtatgtataggtattttgcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaatttcaaaaagatttatttatctatttctttttgtatgtataggtattttgcctg 500
Query: 301 aatgtttatctgtgaaccatgggcatgtagcgatgacagagatcataagggggtgacaga 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aatgtttatctgtgaaccatgggcatgtagcaatgacagagatcataagggggtgacaga 560
Query: 361 tacccaggaacagttagagaatggaccagggcaggggagtaaagtatggagtgtaaaaca 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tacccaggaacagttagagaatggaccggggcaggggagtaaagtatggagtgtaaaaca 620
Query: 421 aaaaacaaaacacttgaggatctttcagaatgtttttcttaataactgcataaattttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaacaaaacacttgaggatctttcagaatgtttttcttaataactgcataaattttca 680
Query: 481 tttctaccaatagtgtaacaaaaacaatttttatttatttgcctccatataaatacttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttctaccaatagtgtaacaaaaacaatttttatttatttgcctccatataaatacttca 740
Query: 541 ccttctgacaagaataattctagctagtgcaagatgatattacagtgttattttaaattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttctgacaagaataattctagctagtgcaagatgatattacagtgttattttaaattt 800
Query: 601 tatttatttggtgataattgattttgagcacttttcatattctgctagatcttcatatgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatttatttggtgataattgattttgagcacttttcatattctgctagatcttcatatgt 860
Query: 661 cttctcttgagaagt 675
|||||||||||||||
Sbjct: 861 cttctcttgagaagt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
