Query= MSMg01no122_f04.b1 MSMg01no122_f04.b1 CHROMAT_FILE:
MSMg01no122_f04.b1 PHD_FILE: MSMg01no122_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:39 2005
(670 letters)
>mm_chr18_36032013_36033082
Length = 1070
Score = 1222 bits (632), Expect = 0.0
Identities = 659/670 (98%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 1 caaactatatggccctactgagatgcaactcatttgagagagtgcctgttagcagtgact 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 caaactatatggccctactgagatgcaactcagttgagagagtgcctgttagcagtgact 264
Query: 61 gggaaaccctgcattgagtcctggacattgaatacaagcttagcctgcaatcccagcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggaaaccctgcattgagtcctggacattgaatacaagcttagcctgcaatcccagcact 324
Query: 121 ccggaggtggaggcaaaaagatcaagaaattcaaggatattctctgctagtctgggttac 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccggaggtggaggcaaaaagttcaagaaattcaaggatattctctgctagtctgggttac 384
Query: 181 aagagtcactgaatctacctatatacatgcatgcatgcatacatacatacatacatacat 240
|||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 385 aagagtcactgaatttacctatatacatgcatgcatg----catgcatgcatacatacat 440
Query: 241 acatacatacatacatacatacatacatacttgtcttgagctagcccggagtagggccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatacatacatacatacatacatacatacttgtcttgagctagcccggagtagggccac 500
Query: 301 atagtttgttaaaaagccttgattgcttgtagtagcagctgactccttgctgaggaccaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagtttgttaaatagccttgattgcttgtagtagcagctgactccttgctgaggaccaa 560
Query: 361 agccttctatgataggcttcagttagagcgacagggaatggttacttcgggttgatcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccttctatgataggcttcagttagagcgacagggaatggttacttcgggttgatcaaa 620
Query: 421 gctaggctagaacaagggagtaaggtccacaagtcatcatgctttatgaggctgaggtag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaggctagaacaagggagtaaggtccacaagtcatcatgctttatgaggctgaggtag 680
Query: 481 gtggtcctgggatagtcctcccacacaaaggtcctgtttcctgcctcaagatgttgcact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggtcctgggatagtcctcccacacaaaggtcctgtttcctgcctcaagatgttgcact 740
Query: 541 gcctccgggttattattaatctgccctgtgttcttggccttgtgctgaatatggggatcc 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctcctggttattattaatctgccctgtgttcttggccttgtgctgaatatggggatcc 800
Query: 601 cgaggtgaatgtttccgcagtgagagaggcagccctgggtaataagtccctgaggggtgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgaggtgaatgtttccgcagtgagagaggcagccctgggtaataagtccctgaggggtgg 860
Query: 661 ctattccgag 670
||||||||||
Sbjct: 861 ctattccgag 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_f04.g1 MSMg01no122_f04.g1 CHROMAT_FILE:
MSMg01no122_f04.g1 PHD_FILE: MSMg01no122_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:39 2005
(696 letters)
>mm_chr18_36145932_36147026
Length = 1095
Score = 1270 bits (657), Expect = 0.0
Identities = 684/693 (98%), Gaps = 3/693 (0%)
Strand = Plus / Minus
Query: 5 tggttgctgagtgaatctcagagcccctgatacagtcttctcactgggataaaggactta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tggttgctgagtgaatctcagagcccctgatacagtcttctcactgggataaaggactta 836
Query: 65 ttccccacacacaaacatacacatgaggctagttcctgtactagggtctagacatcctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttccccacacacaaacatacacatgaggctagttcctgtactagggtctagacatcctct 776
Query: 125 gcaggcccaggcaggccctccgagatagcctctggattctaagacctcaggcagggatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gcaggcccaggcaggccctccgagatagcctctggattctaagacctcaggcagggatat 716
Query: 185 gatattcacacccagtgccttctgtgggtctccaagttctagacagttacgtttcactct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gatattcacacccagtgcc-tctgtgggtctccaagttctagacagttacgtttcactct 657
Query: 245 agtgaccccacatataaggccctcagcacagcacctgtgatggcgatccagacccactta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agtgaccccacatataaggccctcagcacagcacctgtgatggcgatccagacccactta 597
Query: 305 acactttcttcctgatctctgtcattttgatgcaatccaaaggttccactcatgatagat 364
||||| |||| |||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct: 596 acactatctttctgatctccgtcattttgatgcaatccaaaggttccgctcacgatagat 537
Query: 365 ctg-ttggagtagagcaagacagatccccaccagtgcagcagtgcactgccttaagctac 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgcttggagtagagcaagacagatccccaccagtgcagcagtgcactgccttaagctac 477
Query: 424 aggtgaagcaacaaggtcccctgatctcaggatggagagaacaggacagaagctggctga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aggtgaagcaacaaggtcccctgatctcaggatggagagaacaggacagaagctggctga 417
Query: 484 ctcatgacagccaccttttccacaggtgtagcacagacaaagcccatgggcaaaaggccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctcatgacagccaccttttccacaggtgtagcacagacaaagcccatgggcaaaaggccg 357
Query: 544 tacactggatccttctgcagggctgaaaaacacacccagagccttgagggattgtaatca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tacactggatccttctgcagggctgaaaaacacacccagagccttgagggattgtaatca 297
Query: 604 cgtggccacacagttgccagactctgaaggcatgaaggttatggagctgtgaaccccaga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cgtggccacacagttgccagactctgaaggcatgaaggttatggagctgtgaaccccaga 237
Query: 664 ggtaggcagatttttttttttgaggaggaggag 696
||||| |||||||||||||| ||||||||||||
Sbjct: 236 ggtagacagatttttttttt-gaggaggaggag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space: 744310
Effective search space used: 744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
