BAC Information

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BAC

Clone NameMSMg01-122O10
Chromosome18 (Build37)
Map Location 28,901,727 - 28,902,453
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122O10.T7 (MSMg01no122_o10.b1)MSMg01-122O10.TJ (MSMg01no122_o10.g1)
ACCAG332642AG332643
length1,0891,078
length of high quality
(start - end)		719 (88 - 806)711 (85 - 795)
definitionCHROMAT_FILE: MSMg01no122_o10.b1 PHD_FILE: MSMg01no122_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:53 2005CHROMAT_FILE: MSMg01no122_o10.g1 PHD_FILE: MSMg01no122_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTANNNNNTATCAATGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTTTGAATGGACAAGGCCTTTAGGAACTATTTAGACTTTAAA
TGATCTAATTTTTACCTTATATTGTCAGACAAGTAAATAGCACTTTCTAC
TCTTGCATCATAAACAAATTCATTTAATATTTTTGACAGAGATGATATAA
GTGGCTATTACAAGGAATGGGTTAACAATTGATTAATAAAATCTGACATG
TTATTGTTACATAGGTGTTCTGATTATGGAGGGATAGATGAATGGATAAC
AGAACTGGAATTACTTATTGATAGTAAGTATACGATAAATGCAAATTACA
GGAGGTGGACTTCCAATTTGAAAAATCCTATTCTGCAATCACAATTATAA
TGACAGGGTGTCAATACGTACAGATGAGAGTTTGTGTCATTAAGTACATT
CAGACACTTTAATTTATTAACTGATTCAATATTTATTATGTACATAATGT
ATACAGACTATTTTTCTTAGGTGTAGGTCACACAACAGTGAACATGGTTT
CTACTCTCTTGTTACAATTAAAACCAGTATCCCCCATTGTAGCTTTCAAA
CCCCCTGCATACACACTTCTTCTTCTGCTGCCCAGTGATGTAGGTAAGAG
AAGGTGATTTTTGAGCGAAGACACACAGGATCTGAAGACACGACACCGTG
GTAAGCTAGGGAACTCAGAAGTGCTCAGAACTATTCAAAATCTGTTTTGA
CTACTTTCAAAAAAAAAAAAAAAACTTACCTTTCTCACAGAAATGACTGA
AGCATTCTATGTTCGTCAAGAGGAAGAGTAAATCCCATGTATTAGAACCA
TTGTCCTTTTTAAATCATTGGCTAAATGTCTTTTGGAATAGGGCTCTGTT
TTTTTCTTAAAATGAAAAAATAATCCAATGACCTTTAAAATAGGGTTTTT
GTTTTTAAAATGTCCCATAGCTACTAAAATTTTCAGGTCCCCTTGCCTTT
GGAAATTTTAAGCTTTTGAAAATGGTTTTAATTAAAAACAGGGCCCAAAG
GTGATTGAACATTTTTATTTGGCCAAAAACTTATGGCCC

ATCCTTNTNNATAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACTTAGACTCCAGAAAACCA
AATAACCCTATCCTTAAAACAGAGTAGAGAGCTAAGCAAAGAATTCTCAA
AAGGAATATCAAATGGCCTAGAAGCACCTAATGCAGTGTTCAACGTACTT
AGTCATCCTGGAAATGAAAATAAATACAACCCTGAGGTTCAACGTTACAC
CATTCAGAATGGCTACGATCAAAAACTCAGGTGATGCTGGCTAGGATGTG
TAGAAAGAGGAAAACTACTCCGTTGTGGGTGGGATTGCAAGCTAGCACAA
CCACTCTGGAAATCAGTCAGGTGGTTCCTCAGAAAATTAGACTTAGTGTT
ACCTAGGGAGCCAACTCTACCACTCCTGGGCATATACCCAAAAGATGCTC
CAACATATAACAAGGACACATACTCCACTATATTCATAGCAGTCTTCTTT
ATAATAGCCAGAAGCTGGAAAGAACTCAGATGTCCCTCAACAGAGAAATG
GATTCAGAAAATGTGGTACATTTACACAATGGAATACAACTCAGCTATTA
AAAACAATGACTTCACAAAATTCTTAGGGAAATGGATAGAACTAGAAATT
ATCATCCTGAGTGAGGTAACCCAGTCATAAAAGAACATACATAGTGTGTT
CTCACTGATAACTAGGTATTTGCCCAAAACTTGAAATACCCAAAATATAA
CTCACAGACAACAGGAAGCTCATGAAGAAAGAAGACCAAAGTGTAGATGC
TTCAGTCCTTCTTCGAAGACAGAACAAAATACTCACAGGAGGAAATATGG
AGACAAAAGTATGGAGTAGAGACTGTAGGATAGGTCAACATTCCCTACAC
AGCCCCAAACCTTTGACACTGGTTCTGGATTAATCATAAGTGCTATGACA
GGGAAACCTGATACAGTTGGTCTCCCTGAGAGGGTTCTGCCCAAAGCCCT
GGCCAAGTTACAGAAAGGTGAATGCTTCTTCAGCCCAAACCATTTTGGAC
TGAAGAGATCCCCCCAAATTGAAGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_o10.b1 MSMg01no122_o10.b1 CHROMAT_FILE:
MSMg01no122_o10.b1 PHD_FILE: MSMg01no122_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:53 2005
         (719 letters)



>mm_chr18_28901527_28902645
          Length = 1119

 Score = 1270 bits (657), Expect = 0.0
 Identities = 706/731 (96%), Gaps = 16/731 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagactttaaatgatctaattttta----ccttatattgtcagacaagtaaatagcac 56
           |||||||||||||||||||||||||||    |    ||||||||||||||||||||||||
Sbjct: 201 tttagactttaaatgatctaatttttagaggc----tattgtcagacaagtaaatagcac 256

                                                                       
Query: 57  tttctactcttgcatcataaacaaattcatttaatatttttgacagagatgatataagtg 116
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 257 tttctactcttgcatcataaacaaattcatttaatatttgtgacagagatgatgtaagtg 316

                                                                       
Query: 117 gctattacaaggaatgggttaacaattgattaataaaatctgacatgttattgttacata 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctattacaaggaatgggttaacaattgattaataaaatctgacatgttattgttacata 376

                                                                       
Query: 177 ggtgttctgattatggagggatagatgaatggataacagaactggaattacttattgata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtgttctgattatggagggatagatgaatggataacagaactggaattacttattgata 436

                                                                       
Query: 237 gtaagtatacgataaatgcaaattacaggaggtggacttccaatttgaaaaatcctattc 296
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 gtaagtatacgataaatgcaaattacaggaggcggacttccaatttgaaaaatcctattc 496

                                                                       
Query: 297 tgcaatcacaattataatgacagggtgtcaatacgtacagatgagagtttgtgtcattaa 356
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 tgcaatcacaattataatgacagggtgtcaatacatacagatgagagtttgtgtcattaa 556

                                                                       
Query: 357 gtacattcagacactttaatttattaactgattcaatatttattatgtacataatgtata 416
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 557 gtacattcagacactttaatttatgaactgattcaatatttattatgtacataatgtgta 616

                                                                       
Query: 417 cagactatttttcttaggtgtaggtcacacaacagtgaacatggtttctactctcttgtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagactatttttcttaggtgtaggtcacacaacagtgaacatggtttctactctcttgtt 676

                                                                       
Query: 477 acaattaaaaccagtatcccccattgtagctttcaaaccccctgcatacacacttcttct 536
           ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 677 acaattaaagccagtatcccccattctagctttcaaaccccctgcataaacacttcttct 736

                                                                       
Query: 537 tctgctgcccagtgatgtaggtaagagaaggtgatttttgagcgaagacacacaggatct 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctgctgcccagtgatgtaggtaagagaaggtgatttttgagcgaagacacacaggatct 796

                                                                       
Query: 597 gaagacacgacaccgtggtaagctagggaactcagaagtgctcagaactattcaaaatct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gaagacacgacaccgtggtaagctagggaactcagaagtgctcagaactattcaaaatct 856

                                                                       
Query: 657 gttttgactactttcaaaaaaaaaaaaaaaa--------cttacctttctcacagaaatg 708
           |||||||||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 857 gttttgactactttcaaaaaaaaaaaaaaaaaaaaaaaccttacctttctcacagaaatg 916

                      
Query: 709 actgaagcatt 719
           |||||||||||
Sbjct: 917 actgaagcatt 927


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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