Query= MSMg01no123_d17.b1 MSMg01no123_d17.b1 CHROMAT_FILE:
MSMg01no123_d17.b1 PHD_FILE: MSMg01no123_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:40 2005
(456 letters)
>mm_chr18_43567616_43568471
Length = 856
Score = 826 bits (427), Expect = 0.0
Identities = 445/451 (98%)
Strand = Plus / Plus
Query: 6 gaattcaaagacactttcacactcctttttaatctgctattcacagaaaagaagaaatag 65
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaagacactttcacactcatttttaatctgctattcacagaaaagaagaaatag 265
Query: 66 gttgacccatatactcacacattgttacctataggaaaaaatgtcaaggccacccttaag 125
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttgacggagatactcacacattgttacctataggaaaaaatgtcaaggccacccttaag 325
Query: 126 agaggaatgctcttagcaagaacataagaaaatagaaaggaaattaatttttcaaaggtt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaggaatgctcttagcaagaacataagaaaatagaaaggaaattaatttttcaaaggtt 385
Query: 186 aaaagaatgcttaaaagtgcttgtttggcataagaaatgttttctaggggagaaattata 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaagaatgcttaaaagtgcttgtttggcataagaaatgttttctaggggagaaattata 445
Query: 246 atatgccatctttctctctctctctgccaggccctcttagacttcatggtctccatctct 305
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 446 atatgccatctttctctctctctctgccaggccctcttaggcttcatggtctccatctct 505
Query: 306 gactatctgctttctgtagagttgttcatcttttagattttgaaagtaactgatcctacc 365
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 gactatctgctttctgtagagttgttcatcttttagattttgaaagcaactgatcctacc 565
Query: 366 tgatgttagtgacccactcacttagcctgacagcatgagactggaaaaggcccatggttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgatgttagtgacccactcacttagcctgacagcatgagactggaaaaggcccatggttt 625
Query: 426 gcccatcatcccttgttactccagttggcag 456
|||||||||||||||||||||||||||||||
Sbjct: 626 gcccatcatcccttgttactccagttggcag 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_d17.g1 MSMg01no123_d17.g1 CHROMAT_FILE:
MSMg01no123_d17.g1 PHD_FILE: MSMg01no123_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:40 2005
(336 letters)
>mm_chr18_43629338_43630075
Length = 738
Score = 402 bits (208), Expect = e-116
Identities = 212/214 (99%), Gaps = 2/214 (0%)
Strand = Plus / Minus
Query: 125 ccctccaaacattttcaaaggctcattttcaaaggaacctaatcagacacaag--acaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 545 ccctccaaacattttcaaaggctcattttcaaaggaacctaatcagacacaagacacaca 486
Query: 183 tagatatcatagtccccttccctaagttttgcattccctcttcccctaaagttaggtact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tagatatcatagtccccttccctaagttttgcattccctcttcccctaaagttaggtact 426
Query: 243 gttttctttctcaaggtagttgatatttctattcacctacttataaattgatgaagctga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gttttctttctcaaggtagttgatatttctattcacctacttataaattgatgaagctga 366
Query: 303 ttctttcaactttcatgtcacactggcttgacat 336
||||||||||||||||||||||||||||||||||
Sbjct: 365 ttctttcaactttcatgtcacactggcttgacat 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 738
Length adjustment: 9
Effective length of query: 327
Effective length of database: 729
Effective search space: 238383
Effective search space used: 238383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
