BAC Information

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BAC

Clone NameMSMg01-123L04
Chromosome18 (Build37)
Map Location 46,727,379 - 46,727,662
singlet/doubletsinglet
Overlap geneTicam2
Upstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c
Downstream geneEif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123L04.T7 (MSMg01no123_l04.b1)MSMg01-123L04.TJ (MSMg01no123_l04.g1)
ACCAG333237AG333238
length1,2531,374
length of high quality
(start - end)
289 (200 - 488)146 (155 - 300)
definitionCHROMAT_FILE: MSMg01no123_l04.b1 PHD_FILE: MSMg01no123_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:46 2005CHROMAT_FILE: MSMg01no123_l04.g1 PHD_FILE: MSMg01no123_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCTCCNNGGAAATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCG
GAATTCAGGCATCTGTTACTGCCCCTTAGGACCCAGACCTTTTCAAGGNC
AGGGAGCTCATCTCTTCAAGAGCCGACGGTTAGGAAGAGAACTTTGTTCT
TATTTCCAAAAGTCACCCCCGCCTCCAGACCCACAGCACACACAGCTCTG
AACGCTGCTCTGTTTGATTTACAAGGGGGCAAGACCTCCAGAAGAAACAT
CAGTGAGAGAGACCCTGGATAGCATTTTCCACAAGAGCCGACCTCTACTA
TTCTTACTGACCCATATCCCTGGCCCATAATCACCATCAGTAAGTGCAAG
ATAGATGGATTAATGGACACGTTTATCAATTTTCCCCTCTTTAATCTGCT
CTGCCTTTGATACTCTGCTTCTCCATACTCTGCTTCTCTGGATTTTTTTT
TTTTTAATATTTATTTACTTATTTATTTATTTATTTATTTATTTAATAAT
TTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAG
ACACTCCAGAAGAGGGAATCAGATCTCGTTACCGATGGTTGTGAGCCACC
ATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAGCCGTCGGTCG
CTCTTACCCACTGAGCCATCTCACCAGCCCTCTGCTTCCCTGTTGATGAT
AGTAATGCCCTACCAATTTTATCAAGATGACAACTCTGGAAATCCCCCCT
CACATTCCGCCTGACCCCCCCCCCCCAGAGCGCTCCCCCCCTTAATCCCT
CCATCCCCGCCAAAATGCTCTCTTTAACCGTCTCCACAATTTTTCCCATT
TTTTCCCCGGGACCCTGTCCCCTTTGTGAAGGTCAAACACCCACCATTCC
CTCCCTTACCTGAATTATAACTCCCCCTCGACTCCGGCTTGGTCTCCCTG
GACCCCCCCCTCCTCTTCCCTTTCTTCTACGCCTACCTTCAAAACCCTTT
TTTTTCCCCCCCTGCTAAAACCTGACCGCCCTATCTTTCCACGCTGGTTT
AAACCACCCCCCCACAAAAATCACCCCTGCCGCAACCCCCCTCATCTTCT
TCTCTGAAATAACCCCATTCCCCCCCCTTTTCGCGGCTCTCCCCTCCCTC
CTTTTCTTTCGCTCCCCTACACCCCCCACCTTCCTTATTGGTCCTATACC
TCTACTCACAACACTACTACCTTACTCTCCTCTCACCTCTCTCTCTGTTC
CAT
TCCCAAGATCGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTAACCACCCCCGTTGGGNACTAAGGGTGATG
GGGAGTTGTTTTCCTATCCCCTCTGATAGACTTGAATTGGCAAGGTAGCA
GCCATAAGTTTCCTTGCCATATTTCTGCCTGATCCCCCACTAAGCCATCA
ATCATGTGAATGCCATTTCTTTGTGGGCCGAGTCCAGCTGTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
ATGCTCTCGCGCCCTCACACTCTGCTCTCCCTGTCGACGCCGTCCTCCCC
GCAGTCCCCCCTTGCACTCCTGTACCGCGCCTGTAACTTGCCTCACCTCA
TTTTTTTTTCTCCCGCGTGAACCCCCTCCCTCTTTACCTTCTCTGTCTCC
CCCTCCCATGCCCCCCGAAACCCCCCGTTTCCCCCTCTGCCTCCCTGTCT
GCTCTTTGGCACCTTCCCCTAATCTTTCCGCACCTCCCCTCCTCCTCGAA
CGTAACTTCTTTCGCTCTCTCTTCTCTTCTACCTCACCCCCTTTTTCGCC
CTTACCCTGCTCCTTTCCGTTCCCCCTTTCTCCACCCCTTCTCCAACACC
ACCTTCTACCCCGTCTCAAATCTCTCCCCTGTCTTTCTCCTTCTCACACT
CCCCCACTCCCTCCCTCCTTTTACTTCTATTTTCCTTCCTCCACTCGCAC
CCTCCCTCCCTTGTTCCCGCCCTTTTTTCCCCTTTCCTTTCCTTCTCATT
TCCTGCATGCCCATCCCCCCCTTCCTCTCCCTTCCTCCCCCCTCAATACT
CCCTACCTCTTCCTCCCTCTTCTCTTTTCTCCCTTTCTCCTCCATTTTTC
CTCTACTTCTACCTTTCTCCTCCCCATCTCTCTCCTTATTCTCTCCCCCT
AATCCTTTCCTCCCAAACCCCCCATCCCCTTTCTCCACTCCCCCCCTCCT
CTCCTTTCACCTCTCTCCCCTCCCTCTCCTCTTTGCCTCCCTATCCACCT
CCTTCCCTATCTCCCTCCTTATCCTCTCCTCTCCCCTCCTCTTCCCCACT
ACCCCCCTCCCTCCTCTCTTTTCTCCCTCCTTCTCTTTTTCTCTCCCCTT
TACTCTCCCCACCTCTCCCCCCTCTCTCATCCCCCACTGCACCTTTCCTC
CTCCCTCTCCTCTCCCTTCCTCCCTTCCTTTGTTCTCCTCCCTTCCCCCC
CCTCCCCCGTCTCCTCCTCTCCACCTCCTTCCTCCTTCCTCCCTCCTTCT
CTTTGCATTCCTCCCTTCCTCTCTCACCCCCATCTTCCTTGCCTCACTCC
TCTCCTCCTTCCCCCATTCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_l04.b1 MSMg01no123_l04.b1 CHROMAT_FILE:
MSMg01no123_l04.b1 PHD_FILE: MSMg01no123_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:46 2005
         (289 letters)



>mm_chr18_46727179_46727865
          Length = 687

 Score =  482 bits (249), Expect = e-140
 Identities = 277/289 (95%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacgctgctctgtttgatttacaagggggcaagacctccagaagaaacatcagtgagag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gaacgctgctctgtttgatttacaagggggcaagacctcaagaagaaacatcagtgagag 260

                                                                       
Query: 61  agaccctggatagcattttccacaagagccgacctctactattcttactgacccatatcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agaccatggatagcattttccacaagagccgacctctactattcttactgaccaatatcc 320

                                                                       
Query: 121 ctggcccataatcaccatcagtaagtgcaagatagatggattaatggacacgtttatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcccataatcaccatcagtaagtgcaagatagatggattaatggacacgtttatcaa 380

                                                                       
Query: 181 ttttcccctctttaatctgctctgcctttgatactctgcttctccatactctgcttctct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcccctctttaatctgctctgcctctgatactctgcttctccatactctgcttctct 440

                                                            
Query: 241 ggatttttttttttttaatatttatttacttatttatttatttatttat 289
           |     ||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 441 g-----tttttttttaaagatttatttatttatttatttatttatttat 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space:   189840
Effective search space used:   189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)