BAC Information

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BAC

Clone NameMSMg01-124H13
Chromosome18 (Build37)
Map Location 75,607,814 - 75,766,310
singlet/doubletdoublet
Overlap geneGm672
Upstream geneMyo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7
Downstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H13.T7 (MSMg01no124_h13.b1)MSMg01-124H13.TJ (MSMg01no124_h13.g1)
ACCAG333817AG333818
length1,2941,291
length of high quality
(start - end)
470 (113 - 582)276 (123 - 398)
definitionCHROMAT_FILE: MSMg01no124_h13.b1 PHD_FILE: MSMg01no124_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:37 2005CHROMAT_FILE: MSMg01no124_h13.g1 PHD_FILE: MSMg01no124_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,607,814 - 75,608,283)(75,766,036 - 75,766,310)
sequence
ATTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTCGTA
ACTAGTACGCCCCTTAAGGCCTGCTCATATGGCTCCGCACAGCCCCCTGG
CCCTTACAAGGGACCCAAAAGAGGGATACTTTCCAAGCTGTAGCTGTGGC
TTCCTGGGCATCAGGCCTGTGGCACCAGGGCACCCAGCCACCGGTCCAGC
TGCCAGCCTGGCTCTGGAGCCAGCGCCTGAAGTGAGCACGACCGGGGCAA
GTGAGAAGTGGCGCCTGCCTGGGAGACACAATGTCTCCCTGATTTCCTAA
CAGGCCCAGTGCCGTGCCAGGGACCAACGGGCAGCTCCCCAGGTCCAGCC
TCACTTGCGAAACTGTCCTTTCCTCTTATGGAGCGAGCTTCCTGTTTGTA
GCTATGCTGCTGTCTAGAGTTGCAAGAGCGCTAGCCAAGGCACACCTTCT
GTGAGCCCCCTCCTCCTTCCCTGTATCTCCCTCCTCCCTCCCTTCGTCAC
CATGCATAGCTCAGAGGCTACTCCTCAGGAGTAGCCCTTCCACAACACCA
TACAAATAGATTTAATCACTAGAGATGACGGGGGAGGTGGCTGTCAATAG
AGTGATGACCTGAAGACTTCTGGTATCTTACACCTGACGAGCCTCGCCCG
TTTGTTACAGAGGAAGTGGCTCCCGGACATCTCGAGGACCTCTTCTATAG
ATAGGCCCTGGAGATAATCTGGTGGTCCGATCCAGCCATCTTTCCCTGTA
CCCCACCAATAGGAAACCTCCTAAAAGATCCGTTGTACTCAGCTTATGTC
TACCCTTGCAAGCCTGTTTCTTCCAATGGCAAGTGCCCTTACTCCATCTT
ACACCCTGAGAGTACATCGCCAAATTGACCGTCTACTTATCCTGAATAAA
AAAATCTTGACACTTGTTTGAACCTTTCCTTCTGCCATTTAACTATTTGT
TTGTGCCTGTTCCATTCTCCTTTCTCCCTCCCCCTTTCCTCTCTCAACTC
ATAACCTCTTCTCTCCCCTTTAACAATTATCTCCCTCTCTCTTCTGTAAT
ATCCCTCCCTCCTCCCTTTCTACACTCAACAAAACCCTTCCTTCTATCTA
TTTTCTCCTTTTCTACTTATAACCTCCTCTTCCTACTTCAATAATTTCTT
GATATGCCTATTCCCTCCCCTCTTCACGGTTCTTCTCTAACTCCCTCTTA
CATCGGCACTCTCAATACTCTCATTCCTCCATTTCTTTATANTAAACTTC
TTCTCAGTACTTCTCTCTCCTCTTTTCACCATCACTACTCTAAT
TTTTACCAGGCGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTAAGGTCATGCTGTCCTCTAGTGGAACTC
AAGCTCACCCCTTAAGGGCATGAGTTTCCAATTTACTCTTACTTACCAAG
ACCTCTAGGGCTCTAAGGTGCCTGTCTGGACCCCCATCTGGCTTGTTTTC
CTTGACAGGAAACCAGAAGCGATGGTAGACAAATATTTAAACAAATGAGA
AAATGACTCTGGAATTTGAGTTGAAGCTAGAGGTGTTGTCCTTGGGGAGA
GTCAGAGATGAGAAACGTGCCTGAGACTGGGGCAGCCTCTGATCTAGGCT
CTGATTGGTCCCCTACCTGCCCCTCAGCCCTGTAACAGTGTGATAACTTT
TTGACTGGCTGCTGCAGAAGGGATATACTTACCTTGTGCTTTATGTTCTT
ATCATTTTAATCCCCGAACCAGGTTATGATTTCAGGTACTTTTATTATTC
ATGTCCCCCAAATGAAGCAATGGAGGTTTACAGAGAGAGTGGTTTACAGA
ATCCCCCGGGAAGGGATGCATCTGGAGTTCAAACTTTGTCAGTCTGGTGC
CAGCAGCTGTACCCTTAATTGTTTCAAATAGTGATAGCTTTGGCCAGTGA
ACTGGGCCATCATCCCCATTCTGTATGCACACTCCATCACAGAGACCCTG
ATTACTGTTAACACAATATATCTGACTGGCTGGCGTTGCCATTCTGATTA
CATATAATGATAAAGATTCTGCTCTGGTTTTTTGCCATTTCCTGCCTTAC
TGTGTGATCTTTGATATGGCTTTTTGTTCCTTCGGTTCCCTGATTTTTTT
TCCCTTTGCTAACATCGTTCTTTTATTAACCTGTCCTTTTTTAAGCTTTT
TGGGTGTTTGTCGTATGTCTTCCCTTTGTTATTTTTTAAATCTTTCTCTC
TATTAATGTTTTTTCTATTTTCTTCTTCTTTCATTCCCCCCTTTTTTAAT
TTTTGTTTCCTAACATTCTCACTCTTTATTTCTCCACTGGAATCTCTTTC
CTTAGTTTAACCATTCTCCTTCTAAATTTCTCTTCTCTTTTTCGGTCATT
CTTTTTTACTATTGTATAATCTCGCTAAATTCTATATGTTTTTACTCTCT
CTAATGTTATTTAATAAAATACCTTCCTCCTAACCTTTTACTTTATCTTC
TCCTATTCTTTCATCTATCTTTGTATTTATCCCTCCATTTGTCTCTTTCT
TCTCTCAACACCATCTATTTCATTACTGCTTCGCGTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h13.b1 MSMg01no124_h13.b1 CHROMAT_FILE:
MSMg01no124_h13.b1 PHD_FILE: MSMg01no124_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:37 2005
         (470 letters)



>mm_chr18_75607614_75608483
          Length = 870

 Score =  839 bits (434), Expect = 0.0
 Identities = 461/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccaaaagagggatactttccaagctgtagctgtggcttcctgggcatcaggcctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccaaaagagggatactttccaagctgtagctgtggcttcctgggcatcaggcctgtgg 260

                                                                       
Query: 61  caccagggcacccagccaccggtccagctgccagcctggctctggagccagcgcctgaag 120
           ||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagggcacccagccaccggcccagctgccagcctggctctggagccagcgcctgaag 320

                                                                       
Query: 121 tgagcacgaccggggcaagtgagaagtggcgcctgcctgggagacacaatgtctccctga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgagcacgaccggggcaagtgagaagtggcgcctgcccgggagacacaatgtctccctga 380

                                                                       
Query: 181 tttcctaacaggcccagtgccgtgccagggaccaacgggcagctccccaggtccagcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctaacaggcccagtgccgtgccagggaccaacgggcagctccccaggtccagcctc 440

                                                                       
Query: 241 acttgcgaaactgtcctttcctcttatggagcgagcttcctgtttgtagctatgctgctg 300
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 441 acttgcgaaactgtcctttcctcttatggagcgagcttcctgggggtagctatgctgctg 500

                                                                       
Query: 301 tctagagttgcaagagcgctagccaaggcacaccttctgtgagccccctcctccttccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagagttgcaagagcgctagccaaggcacaccttctgtgagccccctcctccttccct 560

                                                                       
Query: 361 gtatctccctcctccctcccttcgtcaccatgcatagctcagaggctactcctcaggagt 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatctccctcctcccccccttcgtcaccatgcatagctcagaggctactcctcaggagt 620

                                                             
Query: 421 agcccttccacaacaccatacaaatagatttaatcactagagatgacggg 470
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 agcccttccacaacaccagacaaatagatttaatcactagagatgacggg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no124_h13.g1 MSMg01no124_h13.g1 CHROMAT_FILE:
MSMg01no124_h13.g1 PHD_FILE: MSMg01no124_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:37 2005
         (276 letters)



>mm_chr18_75765836_75766511
          Length = 676

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttccaatttactcttacttaccaagacctctagggctctaaggtgcctgtctggacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 475 agtttccaatttactcttacttaccaagacctctagggctctaaggtgcctgtctggagc 416

                                                                       
Query: 61  cccatctggcttgttttccttgacaggaaaccagaagcgatggtagacaaatatttaaac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cacatctggcttgttttccttgacaggaaaccagaagcgatggtagacaaatatttaaac 356

                                                                       
Query: 121 aaatgagaaaatgactctggaatttgagttgaagctagaggtgttgtccttggggagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaatgagaaaatgactctggaatttgagttgaagctagaggtgttgtccttggggagagt 296

                                                                       
Query: 181 cagagatgagaaacgtgcctgagactggggcagcctctgatctaggctctgattggtccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagagatgagaaacgtgcctgagactggggcagcctctgatctaggctctgattggtccc 236

                                              
Query: 241 ctacctgcccctcagccctgtaacagtgtgataac 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ctacctgcccctcagccctgtaacagtgtgataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)