BAC Information

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BAC

Clone NameMSMg01-124K11
Chromosome18 (Build37)
Map Location 70,243,368 - 70,243,817
singlet/doubletsinglet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124K11.T7 (MSMg01no124_k11.b1)MSMg01-124K11.TJ (MSMg01no124_k11.g1)
ACCAG333952AG333953
length1,3361,290
length of high quality
(start - end)
481 (126 - 606)471 (128 - 598)
definitionCHROMAT_FILE: MSMg01no124_k11.b1 PHD_FILE: MSMg01no124_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:02 2005CHROMAT_FILE: MSMg01no124_k11.g1 PHD_FILE: MSMg01no124_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATACATTGGGCGCTATAGACTCATATAGGGAGAGGATCCGCGGAATT
CAAGCATACTCACATACACCCATAAAGGCCCCCACACACACACACACACA
CACACACACACCACTACACACACCGACACACACACTCACACACACACTCA
CACACGCACACTCCCACACACAGACACACACACAGACACACAGACACAGA
CACAGACACACAGACACAGACACAGACACACACACAGACACAGACACAGA
CACACACACACACACACACACACACACACACTTTGGCTGGGCCGGACCAC
CTGTCTCAACAATTCCACAAGTGTTCATGCATACGTATGTACATACACAT
ATACCTACACACATATGTATGCACATACATATAGACAAACAGACATACGC
ATATATACTTTGGTAGATGGGGCTGAGCCTCAAATGTCACTCTTTATTTT
TTCTCTCAGCTCCCTTTATACTTTCTCAGACAAAAGTTCTCCATGAAATT
ACCTTATAGATGAAATGTTACACAAAGGGGGATTTATAGAAGGATGTTGA
TATTACCTTCGAAGCAGAGTTTCTATTCTACAAGCTCATTATAAGTTCAC
AGCAACAGTTTGATATGGCCCTTGCTTTATCCTAGTGCACACCAATGGCT
TGCTTTATCCTAGTGCACACCAATGGCTTTCTCTTTGGAGTGACCTATAA
CGAATCTTTTTTCTTGATTACAAATTTGTTTCAAGCCTTCAAGCTTCTTA
TCCCACGGCAGTTAGCCCGTGATGTGCCAAGGTTTACGGAGCTCTATTTG
CCGCTTTAATTCTATAGGGAGCCTGCGATTACGTATATCCCTTTAAGCGT
TCCATAAAATCCTTATCCAGAATTGGTGCAATCTCCTACTCACCCATCCT
GCCATTATCACCTGAACAACACATCTTTATTGTTACCTCTACACAACCAC
CTGCCCAACATCGCCGGGCCCAATGGTCCCCAAGGTTACGGCATTTATCG
CCCGGGAAAGGGAAACTTCTCCAACTCCACCCTTAATAACGAAGCCCTCC
GCTGAACCTTGCTTTCTCAAAACTTCCTCCCATCAACGAGCCACAGCCAA
AATGGGGTGGGCCTCTTTGACTGTGCACCTCCCTTTGGCAGGCCCTAAAA
CCTTCCCCTATAAGCGTCCTTCCGAACATCTGCAGAAACACCCTCCCTAA
ACTGCCTTCACTCCTTTATGTCCTCGNGCCCTTGTAGAAACAGCACTCTC
TCTAATATATATGCTCCCGACACTCTTATAACGCCTCTCCCTCGTGTGGG
ATCATACTGTAATAACCAGCAGACGCCGTCTCTCCG
TTTTTCGAAGATAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTTCAGACATCTGTATAAGACATCACA
ACAAACAAACAACACCTACAACAAACCGGAACTGGCAAAATAAAAGTCTC
CTCACCATTGTTAGTCAGTGATGAGACAATCATGATGAGATTGATATCTA
ACTAATGGCTTGAGCCCCATAAATAATATGGAAGTCATGTGAATAATTCA
TGCCATGTGTCCTGTTGACCTTGATACTTTCCACAACAGTTTAAATTTGC
TTAAAGTTCCAGGAAAACATCTCATTTAAAGCCATGCTGGTTCAGCAATA
TCTGAAGCTACCCAATCTTCAACTGCCAAAGGACCCTGGTATAGCTGTCT
CGTGTGATTCTATGCCAGTGCCTGGCAAACACAGGAGTGGATGTTCACAG
TCATCTATAGGATGGAACACAAGGCCCCCAATGGAGAAGCTAGAGAAAGC
ACCCAAGGAGCTGAAGGGGTCTGCAAACCCTATAGGTGGAACAACAATAT
GAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGATGCATATGTAGCAG
AAGATAGCCTAGTCAATCATCATTGGCAAGAGAGGCCCCTTGGTCTTGCA
AACCTTATATGCCCCAGTACAGGGGAATGCCCAGGGCCAAGAATTGAGAA
TGGGTGGTTAGGGGAGTAGGTCGGTGAGAGGCTACAGGTAACATTTGGCA
CAGCATTTGACATGTATATGAACAAAAACCTATTAAAAAATTACGGGAAA
AAAAAGAATAGTCTATTCTTCGTATTCAATATAAGATAAACTTCTTGATC
TGTGTCCTATGCTCCCACAGCATTTGAACATTTATATTTTTAAAGAAATT
TTGTCCTGCTGACCTTCCTTGTCTTTATTTTCCCCCTAATAGTCTTTGTA
TAATGAATCCCATGACCAATAATCCCTGCTTACAAAAGTTTTTTATACGC
CCCTATTTCTTCATAGGTTAAACACAAAACATCTTTCCTCTGGATTGTAA
TCACTCTTCAATCTATTCTGAATACACTTCCCGTTATTTTCCAATTGTTT
TCTAATTATCTGCTAATTCTCACTTTGCTCTTGTAACTTTTTCAGATTTC
TAAATCCCCTAAACTTCCTTTCCGTCTTTTGGTTGCCCTATTTTGAATGT
GTTACACCTCCTCTTCTCTCTAGCTAATCTCTAACTTGTTACTCCCGGAT
TTACAGATCAATTCAGTAATACTTCCTATATCTTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_k11.g1 MSMg01no124_k11.g1 CHROMAT_FILE:
MSMg01no124_k11.g1 PHD_FILE: MSMg01no124_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:02 2005
         (471 letters)



>mm_chr18_70243368_70244238
          Length = 871

 Score =  801 bits (414), Expect = 0.0
 Identities = 441/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaactggcaaaataaaagtctcctcaccattgttagtcagtgatgagacaatcatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaactggcaaaataaaagtctcctcaccattgttagtcagtgatgagacaatcatgatg 391

                                                                       
Query: 61  agattgatatctaactaatggcttgagccccataaataatatggaagtcatgtgaataat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 390 agattgatatctaactaatggcttgagccccataaatgatatggaagtcgtgtgaataat 331

                                                                       
Query: 121 tcatgccatgtgtcctgttgaccttgatactttccacaacagtttaaatttgcttaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcatgccatgtgtcctgttgaccttgatactttccacaacagtttaaatttgcttaaagt 271

                                                                       
Query: 181 tccaggaaaacatctcatttaaagccatgctggttcagcaatatctgaagctacccaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccaggaaaacatctcatttaaagccatgctggttcagcaatatctgaagctacccaatc 211

                                                                       
Query: 241 ttcaactgccaaaggaccctggtatagctgtctcgtgtgattctatgccagtgcctggca 300
           |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 210 ttcaactgcctaaggaccctggtatagctgtctcgtgtgaagctatgccagtgcctggca 151

                                                                       
Query: 301 aacacaggagtggatgttcacagtcatctataggatggaacacaaggcccccaatggaga 360
           |||||||||||||||| |||||||||||||||| |||||||| | |||||||||||||||
Sbjct: 150 aacacaggagtggatgctcacagtcatctatagtatggaacagagggcccccaatggaga 91

                                                                       
Query: 361 agctagagaaagcacccaaggagctgaaggggtctgcaaaccctataggtggaacaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  agctagagaaagcacccaaggagctgaaggggtctgcaaaccctataggtggaacaacaa 31

                                         
Query: 421 tatgaactaaccagtacccccagagctcgt 450
           ||||||||||||||||||||||||||||||
Sbjct: 30  tatgaactaaccagtacccccagagctcgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)